PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC211756.4_FGP001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 371aa    MW: 39267.1 Da    PI: 4.5818
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC211756.4_FGP001genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-05150171122
                        EEETTTTEEESSHHHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                        y+C+ Cgks++++  L  H   
  AC211756.4_FGP001 150 YTCKECGKSYPTNQALGGHVAG 171
                        9************999888765 PP

2zf-C2H215.93.6e-05205227123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C +Cgk+Fs    L  H+r H
  AC211756.4_FGP001 205 HVCLKCGKMFSKAVALGGHMRAH 227
                        79*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.3E-4138174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.51E-6148176No hitNo description
SMARTSM003550.12150172IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.554150177IPR007087Zinc finger, C2H2
PfamPF139129.1E-7150170IPR007087Zinc finger, C2H2
PROSITE patternPS000280152172IPR007087Zinc finger, C2H2
SMARTSM003550.076205227IPR015880Zinc finger, C2H2-like
PfamPF139125.3E-5205228IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.408205233IPR007087Zinc finger, C2H2
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSSPSLPRLP SVSPGSGVRR RRRDPDEEGD IDALALEEGE LRDPVPGWQE PPDDDALDLE  60
VRGPQHRSPR RLQDFVGLPS PTPSGDCESD ATLSDNDYGG GGIGWAATAS ATSHYSNIVS  120
DAGEGQVAST SRSSAQVATH QQQPPATTPY TCKECGKSYP TNQALGGHVA GHKNKQREAE  180
AVAAAAEAGP DATVLDRRDK VGQSHVCLKC GKMFSKAVAL GGHMRAHYTG PRIVIVRNNK  240
KRCLVPPPPA EEDLASPPPP EEDWAVAGLS RSLSIRAEEE LVAPLPPPPP LPAADEDLAA  300
RRCLSLSINT EEEPPSTAAP AGADGVLRLF GVDIDISEHQ EEQGSSEAAT RRSEGSSGSS  360
STDDQQQQDY Y
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC211756.4_FG001
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC211756.4_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6EIK00.0A0A1D6EIK0_MAIZE; Uncharacterized protein
STRINGAC211756.4_FGP0010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18437610
Representative plantOGRP1732523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.25e-11zinc-finger protein 2