PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AC211756.4_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 371aa MW: 39267.1 Da PI: 4.5818 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.8e-05 | 150 | 171 | 1 | 22 |
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 y+C+ Cgks++++ L H AC211756.4_FGP001 150 YTCKECGKSYPTNQALGGHVAG 171 9************999888765 PP | |||||||
2 | zf-C2H2 | 15.9 | 3.6e-05 | 205 | 227 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+Fs L H+r H AC211756.4_FGP001 205 HVCLKCGKMFSKAVALGGHMRAH 227 79*******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.3E-4 | 138 | 174 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.51E-6 | 148 | 176 | No hit | No description |
SMART | SM00355 | 0.12 | 150 | 172 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.554 | 150 | 177 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.1E-7 | 150 | 170 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 152 | 172 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.076 | 205 | 227 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.3E-5 | 205 | 228 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.408 | 205 | 233 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 207 | 227 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 371 aa Download sequence Send to blast |
MSSPSLPRLP SVSPGSGVRR RRRDPDEEGD IDALALEEGE LRDPVPGWQE PPDDDALDLE 60 VRGPQHRSPR RLQDFVGLPS PTPSGDCESD ATLSDNDYGG GGIGWAATAS ATSHYSNIVS 120 DAGEGQVAST SRSSAQVATH QQQPPATTPY TCKECGKSYP TNQALGGHVA GHKNKQREAE 180 AVAAAAEAGP DATVLDRRDK VGQSHVCLKC GKMFSKAVAL GGHMRAHYTG PRIVIVRNNK 240 KRCLVPPPPA EEDLASPPPP EEDWAVAGLS RSLSIRAEEE LVAPLPPPPP LPAADEDLAA 300 RRCLSLSINT EEEPPSTAAP AGADGVLRLF GVDIDISEHQ EEQGSSEAAT RRSEGSSGSS 360 STDDQQQQDY Y |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | AC211756.4_FG001 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AC211756.4_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1D6EIK0 | 0.0 | A0A1D6EIK0_MAIZE; Uncharacterized protein | ||||
STRING | AC211756.4_FGP001 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18437 | 6 | 10 | Representative plant | OGRP17325 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19580.2 | 5e-11 | zinc-finger protein 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AC211756.4_FGP001 |