PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC211702.2_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 236aa MW: 25516.9 Da PI: 8.4958 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00067 | 53 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F + L H +H AC211702.2_FGP002 53 YKCTLCDKVFASYQALGGHKTRH 75 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 12.1 | 0.00059 | 99 | 121 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++Fs+ L H+ +H AC211702.2_FGP002 99 HQCSLCSRTFSSGQALGGHMTSH 121 79******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.56E-10 | 53 | 121 | No hit | No description |
Pfam | PF13912 | 3.2E-12 | 53 | 77 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 53 | 75 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.806 | 53 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 55 | 75 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.9E-12 | 99 | 123 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.762 | 99 | 126 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.025 | 99 | 121 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 101 | 121 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MALTKPDNQA EWEYLTSCLI MLSRGLRDGD AANATRAVGA APTSAKMADG YKYKCTLCDK 60 VFASYQALGG HKTRHRKPPA AAAPSDGASS SSTAHEKLHQ CSLCSRTFSS GQALGGHMTS 120 HRKPPPPVVV LDFDLNMPAE AEPESRPRRR MPSGHAQTTM LLVTDPPVVP TAAGRCLTRR 180 SRLLWWQHSS PLSYMTPTHI STCHRSLHDT DSCFSFSTSD GGDAGMQVEL LAPSCY |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC211702.2_FG002 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC211702.2_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020406636.1 | 3e-54 | zinc finger protein AZF1 | ||||
TrEMBL | A0A1D6F041 | 1e-123 | A0A1D6F041_MAIZE; Zinc finger protein AZF1 | ||||
STRING | AC211702.2_FGP002 | 1e-174 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10028 | 23 | 35 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 2e-19 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | AC211702.2_FGP002 |