PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC211478.3_FGP004 | ||||||||
Common Name | LOC103652236, NAC100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 154aa MW: 17299.7 Da PI: 10.2601 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.1 | 6.5e-31 | 9 | 93 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ewyfFs rd+kyatg r+nratksgyWkatgkd+ +++ + ++vg++ktLvfy+gr+p+g+kt+Wvmhe+r+ AC211478.3_FGP004 9 STNEWYFFSFRDRKYATGLRTNRATKSGYWKATGKDRVIHTPcswpaaaaghHCTVVGMRKTLVFYRGRTPNGVKTSWVMHEFRM 93 678*************************************9988888776655556***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.267 | 1 | 112 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.07E-37 | 5 | 113 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-15 | 12 | 93 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MVADVAKLST NEWYFFSFRD RKYATGLRTN RATKSGYWKA TGKDRVIHTP CSWPAAAAGH 60 HCTVVGMRKT LVFYRGRTPN GVKTSWVMHE FRMENPHTPP KEDWVLCRVF YKKKADAMDY 120 ADCSDQDAIA VHMPRGSADP RGAAVAASGR GGRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-29 | 1 | 117 | 61 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-29 | 1 | 117 | 61 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-29 | 1 | 117 | 61 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-29 | 1 | 117 | 61 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-29 | 1 | 117 | 64 | 172 | NAC domain-containing protein 19 |
3swm_B | 8e-29 | 1 | 117 | 64 | 172 | NAC domain-containing protein 19 |
3swm_C | 8e-29 | 1 | 117 | 64 | 172 | NAC domain-containing protein 19 |
3swm_D | 8e-29 | 1 | 117 | 64 | 172 | NAC domain-containing protein 19 |
3swp_A | 8e-29 | 1 | 117 | 64 | 172 | NAC domain-containing protein 19 |
3swp_B | 8e-29 | 1 | 117 | 64 | 172 | NAC domain-containing protein 19 |
3swp_C | 8e-29 | 1 | 117 | 64 | 172 | NAC domain-containing protein 19 |
3swp_D | 8e-29 | 1 | 117 | 64 | 172 | NAC domain-containing protein 19 |
4dul_A | 7e-29 | 1 | 117 | 61 | 169 | NAC domain-containing protein 19 |
4dul_B | 7e-29 | 1 | 117 | 61 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC211478.3_FG004 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC211478.3_FGP004 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728336 | 0.0 | KJ728336.1 Zea mays clone pUT6617 NAC transcription factor (NAC100) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008676087.2 | 1e-113 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 2e-38 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A060D2T5 | 1e-112 | A0A060D2T5_MAIZE; NAC domain containing protein 74 (Fragment) | ||||
STRING | AC211478.3_FGP004 | 1e-113 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25067 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 6e-51 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | AC211478.3_FGP004 |
Entrez Gene | 103652236 |