PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC209819.3_FGP009 | ||||||||
Common Name | DOF44, ZEAMMB73_564100, Zm.131948 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Dof | ||||||||
Protein Properties | Length: 206aa MW: 21595.6 Da PI: 10.9046 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 116.4 | 1.1e-36 | 67 | 122 | 5 | 60 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 l+cprC s++tkfCy+nny+++qPr+fC+aC+ryWt+GGa+rnvP+G+grrkn+ AC209819.3_FGP009 67 RLPCPRCLSRDTKFCYFNNYNVNQPRHFCRACHRYWTAGGAIRNVPIGSGRRKNRP 122 689**************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.6E-30 | 68 | 121 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.127 | 68 | 122 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 4.0E-24 | 69 | 121 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 70 | 106 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MPVPGRAAAA CTGAAGIKLF GKVITTPPHH AGAAPPRLQQ AAAASGRGSA DLLEEVARAR 60 AAAAEVRLPC PRCLSRDTKF CYFNNYNVNQ PRHFCRACHR YWTAGGAIRN VPIGSGRRKN 120 RPVLLPPPAP HAVTATDNSR RSGAGSPPVF GSVFTAPYQQ LGAPTQFTTS PAYAATAPLG 180 TTGQCLWLVA TADHRSVASG RAFDLI |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC209819.3_FG009 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269|PubMed:19619493}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Transcriptional repressor of 'CONSTANS' expression (By similarity). Regulates a photoperiodic flowering response. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC209819.3_FGP009 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727006 | 0.0 | KJ727006.1 Zea mays clone pUT3982 C2C2-DOF transcription factor (DOF44) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008656439.1 | 1e-147 | cyclic dof factor 4 | ||||
Swissprot | O22967 | 1e-34 | CDF4_ARATH; Cyclic dof factor 4 | ||||
TrEMBL | A0A1D6FTB4 | 1e-146 | A0A1D6FTB4_MAIZE; Dof zinc finger protein DOF1.5 | ||||
TrEMBL | K7VH90 | 1e-146 | K7VH90_MAIZE; C2C2-DOF transcription factor (Fragment) | ||||
STRING | AC209819.3_FGP009 | 1e-147 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6495 | 28 | 51 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34140.1 | 7e-30 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | AC209819.3_FGP009 |
Publications ? help Back to Top | |||
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