PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC209050.3_FGP003
Common NameLOC103629700, WRKY114
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 465aa    MW: 48999.3 Da    PI: 8.823
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC209050.3_FGP003genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.4e-29330389159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dgy+WrKYGqK+ k++++pr+Y+rC+ a +Cpvkkkv+rsa+d  v++ tYegeHnh 
  AC209050.3_FGP003 330 VKDGYQWRKYGQKVTKDNPCPRAYFRCSLApSCPVKKKVQRSADDSAVLVATYEGEHNHA 389
                        58**************************999****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.326325391IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-28329391IPR003657WRKY domain
SuperFamilySSF1182902.48E-25329391IPR003657WRKY domain
SMARTSM007741.4E-34330390IPR003657WRKY domain
PfamPF031061.1E-24331388IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MASSSHSLIH PSSFDMFCPR SSHDASSRLP SPTQVPELAV ALRPASHSSV QPPSSTAYIF  60
ACPAGATAPL IHPCTSATPQ LPPLLPSLAV PLPATSDPFP APDPDARTSG LLYYAILAAA  120
PMDPWIGQPS LSLDLNVGLP TAARPPATTT TAEVLVEEDF LAVKKDREVQ VQALEAELRR  180
AGEENRRLSD MLRAVVAKYA ELQGQVNGMA APVVSTAGNS AAAAAANRQS SASSDDGGSA  240
AGSPSRKRPV RSDSLDTAPQ HHNRKPPSPY AAAPAPGPDQ MECTSAAVTI VAAAAAYHHE  300
PARRIREAER KPKVSRRFVH ADPSDLSLVV KDGYQWRKYG QKVTKDNPCP RAYFRCSLAP  360
SCPVKKKVQR SADDSAVLVA TYEGEHNHAR PPQHDGGAKR SSAPPAGEAA RPPAPLPLQK  420
QEAGPSSEVA RKNLAEHMAV TLTRDPGFKA ALVSALSGRI LDQGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20315392175WRKY transcription factor 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC209050.3_FG003
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:21961049, ECO:0000269|PubMed:23462973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC209050.3_FGP003
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). {ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:23462973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283680.0KJ728368.1 Zea mays clone pUT6650 WRKY transcription factor (WRKY114) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649033.10.0WRKY transcription factor WRKY28
SwissprotQ0DAJ31e-127WRK28_ORYSJ; WRKY transcription factor WRKY28
TrEMBLK7UYX90.0K7UYX9_MAIZE; WRKY transcription factor (Fragment)
STRINGAC209050.3_FGP0030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP182238103
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.22e-45WRKY DNA-binding protein 18
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y,Wang L
    The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants.
    BMC Evol. Biol., 2005. 5: p. 1
    [PMID:15629062]
  3. Wu KL,Guo ZJ,Wang HH,Li J
    The WRKY family of transcription factors in rice and Arabidopsis and their origins.
    DNA Res., 2005. 12(1): p. 9-26
    [PMID:16106749]
  4. Berri S, et al.
    Characterization of WRKY co-regulatory networks in rice and Arabidopsis.
    BMC Plant Biol., 2009. 9: p. 120
    [PMID:19772648]
  5. Delteil A, et al.
    Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence.
    Mol. Plant Pathol., 2012. 13(1): p. 72-82
    [PMID:21726398]
  6. Peng Y,Bartley LE,Canlas P,Ronald PC
    OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity.
    Rice (N Y), 2010. 3(1): p. 36-42
    [PMID:21961049]
  7. Chujo T, et al.
    OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus.
    Plant Mol. Biol., 2013. 82(1-2): p. 23-37
    [PMID:23462973]
  8. Yazawa T,Kawahigashi H,Matsumoto T,Mizuno H
    Simultaneous transcriptome analysis of Sorghum and Bipolaris sorghicola by using RNA-seq in combination with de novo transcriptome assembly.
    PLoS ONE, 2013. 8(4): p. e62460
    [PMID:23638091]