PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC208663.3_FGP002 | ||||||||
Common Name | NAC34 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 362aa MW: 40789.1 Da PI: 9.2172 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 31 | 7.3e-10 | 51 | 161 | 12 | 126 |
NAM 12 eelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 ++lv +yL ++ + + el i+++d+y ++P L k ++++++ ew+fF++r + +r + +g + g+ k+v + AC208663.3_FGP002 51 DDLVGRYLPARRALRWSELPPQIHDADVYGAHPAFLAKvhpPANGGDRlEWFFFVCRGRGLGG----KRRAGRGAYRLVGEAKPVAA----- 133 689*****99988888888778**************8445533445557********997653....444566999*********98..... PP NAM 100 vglkktLvfykg..rapkgektdWvmhey 126 + +++ +y+ +a+ +++t W m+ey AC208663.3_FGP002 134 -WYCHSFRYYEDaaEASASRETGWRMDEY 161 .8899*****6423777788********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 15.653 | 40 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-5 | 51 | 161 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-19 | 51 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 10.81 | 200 | 358 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.76E-17 | 211 | 356 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MSPKKPAAPG ATDPAAYTSP RDEDTNDGWV LVTAGVGRPP RPPPRRGNSP DDLVGRYLPA 60 RRALRWSELP PQIHDADVYG AHPAFLAKVH PPANGGDRLE WFFFVCRGRG LGGKRRAGRG 120 AYRLVGEAKP VAAWYCHSFR YYEDAAEASA SRETGWRMDE YGDRSDVSGA GAFDMVVCKV 180 YPARGGVLHR RLVQHSTTPA EKRAVVPVKP QVLVQLYLAS RSVGDPLRCR MHHATDVCAD 240 HPAVLTAVLP PANDRFEWFF VVRRPRTKHG DDAIIGFPRR AGPGQYVPAT RYWCVKDGEG 300 RNMGYLLVFL YREDDEATRR LSRAEKWWME EYGFGPDFPY DDNDNDVEEL VVFKVHLRMT 360 RR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC208663.3_FG002 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC208663.3_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727024 | 0.0 | KJ727024.1 Zea mays clone pUT4005 NAC transcription factor (NAC34) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825360.1 | 1e-150 | uncharacterized protein LOC112900773 | ||||
TrEMBL | A0A060CZR7 | 0.0 | A0A060CZR7_MAIZE; NAC transcription factor (Fragment) | ||||
STRING | AC208663.3_FGP002 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14767 | 18 | 19 | Representative plant | OGRP14816 | 4 | 4 |
Link Out ? help Back to Top | |
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Phytozome | AC208663.3_FGP002 |
Entrez Gene | 103648524 |