PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC207656.3_FGP002
Common NameARF19, LOC100280136
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 716aa    MW: 77519.9 Da    PI: 7.1331
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC207656.3_FGP002genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.6e-24114215199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+  
  AC207656.3_FGP002 114 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM-- 201
                        89****************************996555555..8999*********************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        +++++ l+v+++r+
  AC207656.3_FGP002 202 RTENGDLCVGIRRA 215
                        4588999****997 PP
2Auxin_resp117.11.5e-38280363183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        aa+ a ++++FevvY+Prast+eF+vk+  v++a+++++++GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  AC207656.3_FGP002 280 AANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWCPGMRFKMAFETEDSSRISWfMGTVSAVHVADPIRWPNSPWRLLQ 363
                        688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-37106222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-29109216IPR015300DNA-binding pseudobarrel domain
CDDcd100179.95E-21113214No hitNo description
SMARTSM010193.4E-21114216IPR003340B3 DNA binding domain
PROSITE profilePS5086312.999114216IPR003340B3 DNA binding domain
PfamPF023622.5E-22114215IPR003340B3 DNA binding domain
PfamPF065078.7E-33280363IPR010525Auxin response factor
PROSITE profilePS5174519.926629710IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MERERESDRC LDPQLWHACA GGMVQMPAVH SKVYYFPQGH AEHAQGPVDL PAGRVPALVL  60
CRVAAVRFMA DPDTDEVFAK IRLAPVRPNE PGYADDAIGA AAASGAQEDK PASFAKTLTQ  120
SDANNGGGFS VPRYCAETIF PRLDYSADPP VQTVLAKDVH GVVWKFRHIY RGTPRRHLLT  180
TGWSTFVNQK KLVAGDSIVF MRTENGDLCV GIRRAKKGGI GGPEFMHHHH QQPPPPQGGG  240
YAGFSMFLRG EEDGGKMMAA AATRGKAARV RVRPEEVVEA ANLAVSGQPF EVVYYPRAST  300
PEFCVKAGAV RAAMRTQWCP GMRFKMAFET EDSSRISWFM GTVSAVHVAD PIRWPNSPWR  360
LLQVAWDEPD LLQNVKRVSP WLVELVSNMP VIHHLTATPF SPPRKKLCVP LYPELPLEGQ  420
FPAPMFHGSP LLGRGGAGGP MCYFPDGTPA GIQGARHAQF GISLSDLHLN KLQPGLSPHG  480
LHRQLDHGVQ VQVQQPRIAA GLIVGGHPAA RDDVSCLLTI GTPKSKKPPS DVKKASTAAA  540
PQLMLFGKAI LTEQQISLGG GNVVPALAKK SPSDDDDDVA ERTVSNSDVS SPGRSNQDGT  600
SSGGGPAARA CWQEEECNNR AAGSEDDLLG HCKVFMQSED VGRTLDLSAV ASYEELYQRL  660
ADMFGVDKAE LTSHVFYRDD ASGALKHPGD EPFSEFTKTA RRLTILTDES SDSLAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-771138451388Auxin response factor 5
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC207656.3_FG002
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC207656.3_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0045340.0HM004534.1 Zea mays auxin response factor 19 (ARF19) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001347953.10.0Auxin response factor 16
RefseqXP_023158248.10.0auxin response factor 16 isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1D6GTU90.0A0A1D6GTU9_MAIZE; Auxin response factor
STRINGAC207656.3_FGP0020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]