PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC206951.3_FGP017 | ||||||||
Common Name | EREB182, LOC100281138 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 306aa MW: 33108.2 Da PI: 4.4962 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.9e-19 | 91 | 140 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + r++lg+f +ae Aa+a+++a++ ++g AC206951.3_FGP017 91 QYRGVRRRP-WGKWAAEIRDPV----KgVRVWLGTFPSAEAAARAYDHAARGIRG 140 69*******.**********75....44**********************98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.16E-18 | 90 | 147 | No hit | No description |
SMART | SM00380 | 1.6E-37 | 91 | 154 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-32 | 91 | 150 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-22 | 91 | 149 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.579 | 91 | 148 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-11 | 92 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 92 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 114 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MCGGAILAEL IPTTPARRGG AAWPAGKCKR RKANDFEAAF REFDEDSEEE EEDEGVVESK 60 PAFVVRASSA ATQPRARQEQ RSRRRAPDQQ QYRGVRRRPW GKWAAEIRDP VKGVRVWLGT 120 FPSAEAAARA YDHAARGIRG PRAKLNFPSS SSSAAGAPAS RKRARTADAD AVIDLEEQEQ 180 RPAAAALKHE AAECSGSDAL PDFSWQGVSA AYDEPPAPRP AFDFEARPES AADEASPRAS 240 DSESDALFDS LLFGDQFAFF DAGAYESLDS LFSADAVQSN AAAAADQDMP LWSFDDGCLV 300 EDNLSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-20 | 79 | 157 | 2 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.38645 | 0.0 | cell culture| ear| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC206951.3_FG017 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC206951.3_FGP017 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068551 | 0.0 | BT068551.1 Zea mays full-length cDNA clone ZM_BFb0310P02 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147529.2 | 0.0 | ethylene-responsive element binding protein 2 | ||||
TrEMBL | C0PJT2 | 0.0 | C0PJT2_MAIZE; AP2-EREBP transcription factor | ||||
STRING | AC206951.3_FGP017 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4371 | 26 | 54 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 1e-20 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | AC206951.3_FGP017 |