PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC206951.3_FGP016 | ||||||||
Common Name | LOC100502296 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 271aa MW: 28943 Da PI: 4.5928 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.9 | 1e-17 | 77 | 126 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y GVr+++ +g+W+Ae+rdp+ r r++lg+f tae Aa+a+++a++ l+g AC206951.3_FGP016 77 PYYGVRRRP-WGKWAAEVRDPV----RgVRVWLGTFATAEAAARAYDHAARDLRG 126 688******.**********63....56************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.7E-21 | 76 | 135 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.314 | 77 | 134 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-31 | 77 | 140 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-30 | 78 | 135 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.46E-15 | 78 | 134 | No hit | No description |
Pfam | PF00847 | 2.9E-11 | 78 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-10 | 78 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-10 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MCGGAILAEL IPSAPARRGV TPGHGSGGKG RTAANDDDDF EAAFRDFDED SEEEPVGAIT 60 KKAFGFAGTR RRRPSSPYYG VRRRPWGKWA AEVRDPVRGV RVWLGTFATA EAAARAYDHA 120 ARDLRGATAR LNFPSNSKRR SAVAKAAPRV DEDEDEDENG GGGALPDRSC QGMSAVGLCV 180 ELGGASKRAR TEPQEEAQGR EKKVAPALAP SDDSADTLLM DAFMFGDPFS FFDGGLCYEP 240 AVTMDCQLLG GDAVFCDDSV GLWSFDDSVC F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 78 | 143 | 15 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC206951.3_FG016 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC206951.3_FGP016 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087688 | 0.0 | BT087688.1 Zea mays full-length cDNA clone ZM_BFb0158A18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001183703.1 | 0.0 | uncharacterized protein LOC100502296 | ||||
TrEMBL | C4JA41 | 0.0 | C4JA41_MAIZE; Uncharacterized protein | ||||
TrEMBL | K4JE63 | 0.0 | K4JE63_MAIZE; AP2-EREBP-type transcription factor (Fragment) | ||||
STRING | AC206951.3_FGP016 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4371 | 26 | 54 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.3 | 9e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | AC206951.3_FGP016 |
Entrez Gene | 100502296 |