PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC206165.3_FGP007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HSF | ||||||||
Protein Properties | Length: 469aa MW: 51623.8 Da PI: 5.3485 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 106.4 | 2.3e-33 | 25 | 116 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl k+ye++ed+++ +++sw g sfvv+++ ++++++LpkyFkhsnf+SF+RQLn+YgF+k++ e+ weF+++ F +g+k+l AC206165.3_FGP007 25 FLVKTYEMVEDPATIHVVSWGPGGASFVVWNPPDLSRDLLPKYFKHSNFSSFIRQLNTYGFRKINPER---------WEFANDDFIRGHKHL 107 9****************************************************************999.........*************** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l++i+r+k AC206165.3_FGP007 108 LKRIHRRKP 116 ******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 2.86E-34 | 20 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.8E-36 | 21 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.3E-57 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-18 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.0E-29 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-18 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-18 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MEGSNSNSHG GAGGGGGGSS SPTPFLVKTY EMVEDPATIH VVSWGPGGAS FVVWNPPDLS 60 RDLLPKYFKH SNFSSFIRQL NTYGFRKINP ERWEFANDDF IRGHKHLLKR IHRRKPVHSH 120 SLRTQASGPL AESQRRELED EISRLRYEKS LLLADLQRQN QQQRGISWQM QSLESRLAQM 180 EERQRSVVAS LCDILQRRGV VRVPASALET TDHSSKKRRV PIPKTDLFVA GEQPKVEEQQ 240 VLPFLQAVGA EAPGVSPIRV LDAEPFQKME LALVSLEDFF QRAAPPAPAL EMCTGAAAAA 300 AEPSPPLTLG EMLSVPAPVD TNIDLQLQSS ACQNPFASTS GRDQMSSPLA EPPSYAQSPM 360 LLPMAQLHGY DYRAAQVDMC SDTTTGDTSQ DETTSETGGS HGPAKVNDVF WERFLTDAEG 420 KSEAIEAKED VKAAVDRSCL RLHDNVDRIT EQMGQLDSAE NDSYAIQNC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-21 | 12 | 114 | 16 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-21 | 12 | 114 | 16 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-21 | 12 | 114 | 16 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC206165.3_FG007 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Hardly expressed in young leaves at 14 days after sowing (DAS). Expression detected in adult leaves at 28 DAS and increases with growing stage. {ECO:0000269|PubMed:12032317}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC206165.3_FGP007 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008649894.1 | 0.0 | heat stress transcription factor A-4d isoform X2 | ||||
Swissprot | Q93VB5 | 1e-149 | HFA4D_ORYSJ; Heat stress transcription factor A-4d | ||||
TrEMBL | A0A1D6MA83 | 0.0 | A0A1D6MA83_MAIZE; Heat stress transcription factor A-4a | ||||
STRING | AC206165.3_FGP007 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3296 | 37 | 78 | Representative plant | OGRP12863 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45710.1 | 6e-67 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | AC206165.3_FGP007 |
Entrez Gene | 103630625 |
Publications ? help Back to Top | |||
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