PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC206165.3_FGP007
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 469aa    MW: 51623.8 Da    PI: 5.3485
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC206165.3_FGP007genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.42.3e-33251162102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl k+ye++ed+++ +++sw   g sfvv+++ ++++++LpkyFkhsnf+SF+RQLn+YgF+k++ e+         weF+++ F +g+k+l
  AC206165.3_FGP007  25 FLVKTYEMVEDPATIHVVSWGPGGASFVVWNPPDLSRDLLPKYFKHSNFSSFIRQLNTYGFRKINPER---------WEFANDDFIRGHKHL 107
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  AC206165.3_FGP007 108 LKRIHRRKP 116
                        ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.86E-3420114IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-3621114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5721114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-182548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-2925114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-187688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEGSNSNSHG GAGGGGGGSS SPTPFLVKTY EMVEDPATIH VVSWGPGGAS FVVWNPPDLS  60
RDLLPKYFKH SNFSSFIRQL NTYGFRKINP ERWEFANDDF IRGHKHLLKR IHRRKPVHSH  120
SLRTQASGPL AESQRRELED EISRLRYEKS LLLADLQRQN QQQRGISWQM QSLESRLAQM  180
EERQRSVVAS LCDILQRRGV VRVPASALET TDHSSKKRRV PIPKTDLFVA GEQPKVEEQQ  240
VLPFLQAVGA EAPGVSPIRV LDAEPFQKME LALVSLEDFF QRAAPPAPAL EMCTGAAAAA  300
AEPSPPLTLG EMLSVPAPVD TNIDLQLQSS ACQNPFASTS GRDQMSSPLA EPPSYAQSPM  360
LLPMAQLHGY DYRAAQVDMC SDTTTGDTSQ DETTSETGGS HGPAKVNDVF WERFLTDAEG  420
KSEAIEAKED VKAAVDRSCL RLHDNVDRIT EQMGQLDSAE NDSYAIQNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-211211416129Heat shock factor protein 1
5d5v_B1e-211211416129Heat shock factor protein 1
5d5v_D1e-211211416129Heat shock factor protein 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC206165.3_FG007
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Hardly expressed in young leaves at 14 days after sowing (DAS). Expression detected in adult leaves at 28 DAS and increases with growing stage. {ECO:0000269|PubMed:12032317}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC206165.3_FGP007
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649894.10.0heat stress transcription factor A-4d isoform X2
SwissprotQ93VB51e-149HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLA0A1D6MA830.0A0A1D6MA83_MAIZE; Heat stress transcription factor A-4a
STRINGAC206165.3_FGP0070.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Representative plantOGRP1286345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.16e-67HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]