PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC205574.3_FGP006
Common NameZm.23823
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 565aa    MW: 58828.3 Da    PI: 7.3024
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC205574.3_FGP006genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.65.3e-35210304286
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssas. 83 
                        +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  +          ++++s++ ++s ++s++ 
  AC205574.3_FGP006 210 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLETLpawqptanaAAPPSSSTHPDSAENSDDq 301
                        79**************************************************************8888776654444444433333333330 PP

                TCP  84 nss 86 
                        ++ 
  AC205574.3_FGP006 302 AQA 304
                        222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-31210301IPR005333Transcription factor, TCP
PROSITE profilePS5136933.257212270IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MYQCVGLVCY GRRRVGWTRL VGRGAAVAAG NQAGDLDPRH HHRAPHGGDA GGGGEGGGGG  60
GAQQEADEQQ RHHNNRLLQF HQQVQQNQDP PPVPLFQLQH LQAAAAVRQR GGLSAEYALL  120
DPMGDAGQSH SHRHHHGFQP QLLSFGGVGQ HHMHQFTAQA PAASHSSRPR IGGVGAGGEA  180
AAATSASHSR ARGGAGEIVA VQGGHIVRST GRKDRHSKVC TARGPRDRRV RLSAHTAIQF  240
YDVQDRLGYD RPSKAVDWLI KNAKDAIDKL ETLPAWQPTA NAAAPPSSST HPDSAENSDD  300
QAQAITVAAH APFDFSGAGG ASGGAAGFLP ASLDSDSIAD TIKSFFPMAG TGGGGEASSS  360
TAAAQSSAMG FQSYTPDLLS RTGSHSQELR LSLQSLPDPM FHQQQDRSEA HGGNGSAQQA  420
LFSGAASYSF GGGAMWGEQA QSQRMVPWTV PDPGGGSAGG YLFNVSQQAA HMQAAFGGQS  480
QFFFQRGPLQ SSNQPSERGW PESVEADNPM QHGGLSPAVS AIGFSPGVGF SGIRIPTRMQ  540
GDEEHNGGGN GDKPPPPSVS SASHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-20217270154Putative transcription factor PCF6
5zkt_B1e-20217270154Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.238230.0ear| meristem| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC205574.3_FG006
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC205574.3_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557080.0EU955708.1 Zea mays clone 1543050 mutant cincinnata mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310872.10.0transcription factor PCF5
RefseqXP_021310873.10.0transcription factor PCF5
SwissprotA2WM140.0PCF5_ORYSI; Transcription factor PCF5
TrEMBLA0A1D6MFZ20.0A0A1D6MFZ2_MAIZE; Transcription factor TCP4
STRINGAC205574.3_FGP0060.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.15e-49TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3