PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC205562.3_FGP002 | ||||||||
Common Name | WRKY97, ZEAMMB73_085987 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 320aa MW: 34317.4 Da PI: 6.3636 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 84.6 | 9.4e-27 | 116 | 176 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK++ g+++pr+YYrCt++ +C ++k+v+r+++ p +++++Y+geH+++ AC205562.3_FGP002 116 DDGHSWRKYGQKDILGARHPRAYYRCTHRnsqNCLATKQVQRADDHPALFDVVYHGEHTCR 176 8***************************98999**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-26 | 104 | 176 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-24 | 113 | 176 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.3E-39 | 115 | 177 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-26 | 116 | 176 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.461 | 116 | 173 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MAEAVESGGR ALLVSELGRV QDLVSQLELQ LRAPADADSV DLCRCLVQQI VALTDRSIGM 60 LHSSPDLAPS PLTATGSPIS SDAASDHHPF RPAGASPKKR KATARWTSQQ VRVSADDGHS 120 WRKYGQKDIL GARHPRAYYR CTHRNSQNCL ATKQVQRADD HPALFDVVYH GEHTCRPAAA 180 GGGSKRAQQH NPHAQAALQG LAARLTVATT TTDNAAGLPP MTPESCPVRG ASSPWSLASP 240 VGSDFNGCLH QGISPCPVPG YRDWTSDVDL QEVVSSAFAA VSSVAPLPVP DDEFMPLECV 300 EYVFDQNFDI DTAMPSLYYP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 6e-22 | 116 | 176 | 9 | 69 | OsWRKY45 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.10017 | 0.0 | meristem| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC205562.3_FG002 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC205562.3_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955076 | 0.0 | EU955076.1 Zea mays clone 1508862 WRKY69 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147379.1 | 0.0 | uncharacterized protein LOC100280987 | ||||
TrEMBL | B6SQR1 | 0.0 | B6SQR1_MAIZE; Putative WRKY DNA-binding domain superfamily protein | ||||
STRING | AC205562.3_FGP002 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 9e-33 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | AC205562.3_FGP002 |
Entrez Gene | 100280987 |
Publications ? help Back to Top | |||
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