PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC205484.3_FGP005 | ||||||||
Common Name | ZEAMMB73_146151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 241aa MW: 27460.5 Da PI: 9.2568 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 33.1 | 1.6e-10 | 4 | 52 | 57 | 105 |
NAM 57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkkt 105 ewyf++ rd+ky+ +nrat+ gyWk tgkd ev+s ++ ++ ++t AC205484.3_FGP005 4 EWYFYCLRDRKYPVVLCTNRATAVGYWKITGKDCEVHSGRSGATAEQRT 52 8************************************976555555544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 13.043 | 1 | 97 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-9 | 3 | 43 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MGVEWYFYCL RDRKYPVVLC TNRATAVGYW KITGKDCEVH SGRSGATAEQ RTIRSILDRG 60 KTTTTLGKVN NDNLSRLLTE YIGMDNMLAL VCKTYDGVKG LDKYDKDDII DKTSGVHGLG 120 RAVGKFLYGR ITVFCLENLS KNLKVKFVVT TDVSSLPENV VEMEEQVKRK NWQKEMVLED 180 MKREEDLLKQ VKELYRKQKQ ELMDYVTQPA VTQTSRDSPA THSPATPGSN PFGAKLSNKW 240 W |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.83047 | 1e-149 | aerial organ| meristem| pollen| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC205484.3_FG005 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC205484.3_FGP005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036136 | 1e-147 | BT036136.1 Zea mays full-length cDNA clone ZM_BFb0097J05 mRNA, complete cds. | |||
GenBank | BT083539 | 1e-147 | BT083539.1 Zea mays full-length cDNA clone ZM_BFb0009E06 mRNA, complete cds. | |||
GenBank | EU967058 | 1e-147 | EU967058.1 Zea mays clone 299201 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132336.1 | 1e-61 | uncharacterized protein LOC100193778 | ||||
TrEMBL | A0A1D6Q3P3 | 1e-130 | A0A1D6Q3P3_MAIZE; Putative NAC domain transcription factor superfamily protein | ||||
STRING | AC205484.3_FGP005 | 1e-180 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 5e-15 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | AC205484.3_FGP005 |