PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC204621.4_FGP006
Common NameLOC103652680, ZEAMMB73_749457
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 294aa    MW: 31370.6 Da    PI: 9.6636
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC204621.4_FGP006genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS30.54.6e-10164267296
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaa.rlar.svselykalppsetsekn.....sseelaalkl..f 84 
                        ++lL  c +av++g+l+++q+l   l el s +gd+++Rlaa+ ++ALa+ rl    ++  + a+++ + +  +     ++ +l+  +l  f
  AC204621.4_FGP006 164 EQLLNPCTTAVEAGNLTRVQHLFYVLGELTSFSGDANHRLAAHGLRALARsRLPAaVGPAAATAVRVPPCDCPTpafagTEPRLFRASLirF 255
                        689*********************************************8626665455666666544443333334554333333333379* PP

               GRAS  85 sevsPilkfshl 96 
                        +evsP++ +++ 
  AC204621.4_FGP006 256 HEVSPWFALANA 267
                        ******999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.869137294IPR005202Transcription factor GRAS
PfamPF035141.6E-7164267IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAATIRRSCA CIATKRKYAT NYMRGLSNIF LQRAGAARVS SCKIACMKPM SCHEQEQHAE  60
LAAATTNSGF DWLEDSVSFL TADVDAAGCR GYGWCPPLAH TSPSIASPAV SEPLSKKRKS  120
PAHRASAHSG SNQRRRADQA DRPGAGGGKK GGGAGSDRDT RWAEQLLNPC TTAVEAGNLT  180
RVQHLFYVLG ELTSFSGDAN HRLAAHGLRA LARSRLPAAV GPAAATAVRV PPCDCPTPAF  240
AGTEPRLFRA SLIRFHEVSP WFALANAAME WNREKGNRCR DAVSVTGLIV DVTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146152GGKKGGG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC204621.4_FG006
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC204621.4_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280150.0KJ728015.1 Zea mays clone pUT6151 GRAS transcription factor (GRAS74) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020400316.11e-113nodulation-signaling pathway 1 protein
TrEMBLA0A1D6PN381e-148A0A1D6PN38_MAIZE; Scarecrow-like protein 29
STRINGAC204621.4_FGP0060.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Representative plantOGRP40821525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.12e-17GRAS family protein