PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC204212.4_FGP001 | ||||||||
Common Name | MYBR78 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 96aa MW: 10320.1 Da PI: 8.4851 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.1 | 9.7e-09 | 4 | 51 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT+ l+ +a + + ++ +W+ +ar +g g+t++++k ++ + AC204212.4_FGP001 4 SWTESQNNLFERALAVYDKDtpdRWHNVARAVGCGKTAEDVKRHYKYL 51 7********************************99**********876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.739 | 1 | 56 | IPR017884 | SANT domain |
SMART | SM00717 | 1.7E-8 | 1 | 54 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.81E-12 | 3 | 58 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-4 | 4 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.1E-7 | 4 | 51 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.79E-6 | 4 | 52 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MGSSWTESQN NLFERALAVY DKDTPDRWHN VARAVGCGKT AEDVKRHYKY LKTDVKHIET 60 EEGGRGSQSS SPAGAGAGGS GSSSSSSWGR DNGDKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-20 | 2 | 60 | 8 | 65 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.34200 | 1e-160 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC204212.4_FG001 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC204212.4_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086715 | 1e-160 | BT086715.2 Zea mays full-length cDNA clone ZM_BFb0164B15 mRNA, complete cds. | |||
GenBank | KJ728340 | 1e-160 | KJ728340.1 Zea mays clone pUT6621 MYB-related transcription factor (MYBR78) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001353638.1 | 5e-65 | uncharacterized LOC100284980 | ||||
Swissprot | Q1A173 | 1e-24 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A060CZ59 | 1e-63 | A0A060CZ59_MAIZE; MYB-related transcription factor (Fragment) | ||||
TrEMBL | A0A3L6EML3 | 1e-63 | A0A3L6EML3_MAIZE; Protein RADIALIS-like 6 | ||||
STRING | AC204212.4_FGP001 | 2e-64 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 4e-26 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | AC204212.4_FGP001 |