PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC203535.4_FGP002 | ||||||||
Common Name | NAC90, Zm.59648 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 246aa MW: 26239.4 Da PI: 8.0881 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.6 | 4.5e-31 | 13 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pk.....kvkaeekewyfFskrdkkya.tgkrknratksgyWka 85 lp GfrF+Ptdeel+ +yL++k+ + +l++ vi+++d+ +++PwdL p+ + + + e +fF++ +++ +g + ra+ +g+W+ AC203535.4_FGP002 13 LPIGFRFRPTDEELLLHYLRRKALACPLPA-GVIPDADLARLHPWDLlPAaapggSGADADGERFFFHRPATQCWrKGGGAARAAGTGVWRP 103 699***************************.99**************544455542222445889999888776527999************ PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +gk++ vls ++ vg+k+tLvf r + +t+W mheyrl AC203535.4_FGP002 104 SGKETLVLSPrCKRPVGTKRTLVFCPRRGRA--RTHWAMHEYRL 145 ********9877889**********655555..9********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-41 | 8 | 187 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.194 | 13 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-20 | 14 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEGRRPGAPV AGLPIGFRFR PTDEELLLHY LRRKALACPL PAGVIPDADL ARLHPWDLLP 60 AAAPGGSGAD ADGERFFFHR PATQCWRKGG GAARAAGTGV WRPSGKETLV LSPRCKRPVG 120 TKRTLVFCPR RGRARTHWAM HEYRLLPAGL HPYGCAAGAG ANAPPPTNVS SHGGDAAADW 180 VVCRIFRRAR PAHRARLGGG AREELEEEHA AEESPSSCVT DASETLDQEE DDGDEGSSSS 240 TVASSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-22 | 13 | 194 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-22 | 13 | 194 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-22 | 13 | 194 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-22 | 13 | 194 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-22 | 13 | 194 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-22 | 13 | 194 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.125865 | 0.0 | endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC203535.4_FG002 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC203535.4_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969970 | 0.0 | EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008674632.1 | 1e-177 | NAC transcription factor ONAC010 | ||||
TrEMBL | A0A1D6N2M5 | 1e-175 | A0A1D6N2M5_MAIZE; NAC domain-containing protein 68 | ||||
STRING | AC203535.4_FGP002 | 1e-176 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8233 | 30 | 47 | Representative plant | OGRP17305 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 4e-26 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | AC203535.4_FGP002 |
Entrez Gene | 103650824 |