PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC203535.4_FGP001
Common NameZm.96126
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 925aa    MW: 104563 Da    PI: 5.0843
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC203535.4_FGP001genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.2e-14853248
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  AC203535.4_FGP001  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                       78*****************************.************986 PP
2Myb_DNA-binding32.91.5e-1060103248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  AC203535.4_FGP001  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                        68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139214.8E-131070No hitNo description
CDDcd001676.64E-121053No hitNo description
SuperFamilySSF466896.83E-2133107IPR009057Homeodomain-like
CDDcd116593.11E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.2E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118313.9E-60406656IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 925 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEANDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDTRHR KRKRKGIDYN AEIPFEKRPP SGFYDTVGED RPPEHVQFPT  240
TIEELEGKRR ADIEAQLRKQ DIARNKILQR QDAPAAIMQA NKLNDPEAVT KRSKLMLPPP  300
QISDHELEEI AKMGSAGDPA LADELGEGST ATRTLLASYS QTPRLGMTPL RTPQRTPAGK  360
GDAIMMEAEN LARLRESQTP LLGGDNPELH PSDFSGVTPR KKEIQTPNPM ATPLASPGPG  420
ITPRISMTPS REGHSFGLTP KATPLRDELN INEVEMQDNT KLELRRQAEL RKSLRSGFAS  480
IPQPKNEYQI VMPPITEDEK EEAEEKIEED MSDRLARERA EEQARHEALL RKRSKVLQRS  540
LPRPPAVSVE IIRQSLIRSG ESRSRSTFMP PTSLEQADEL INEELLRLLE HDNAKYPLDE  600
KTQKEKKKGS KRQQNGGPLV PEIDDFDEDE LKEASSMVEE EIQYLRVAMG HENESFEDFV  660
KAHDACQDDL MFFPTSNSYG LASVAGNADK ISALQNEFET VKKRMDDEAK KASRLEQKIK  720
LLTQGYQIRA GKLWSQVQDT FKQMDTAATE LECFQELQKQ EHLAASYRIQ NLSEEVSKQK  780
ALERTLQSRY GELVSGFQRI QEQVEEHKRQ LKVQEAVEAE SHAQEEEAAA SNHAAAEEED  840
ERKEDDERKE EDGRKSLSSE EKPQQTSTAT DEEPAGSKGT TEDQMDVDSG NGEGGVVGPV  900
PPAPDTEGGN DEVSVQEISE AQPLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027943792Cell division cycle 5-like protein
5xjc_L0.027943792Cell division cycle 5-like protein
5yzg_L0.027943792Cell division cycle 5-like protein
5z56_L0.027943792Cell division cycle 5-like protein
5z57_L0.027943792Cell division cycle 5-like protein
5z58_L0.027943792Cell division cycle 5-like protein
6ff4_L0.027943792Cell division cycle 5-like protein
6ff7_L0.027943792Cell division cycle 5-like protein
6icz_L0.027943792Cell division cycle 5-like protein
6id0_L0.027943792Cell division cycle 5-like protein
6id1_L0.027943792Cell division cycle 5-like protein
6qdv_O0.027943792Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDTRHRKRKRK
2199204RKRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.961260.0embryo| meristem| ovary| pedicel| pericarp| pollen| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC203535.4_FG001
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC203535.4_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4589620.0AF458962.1 Zea mays CDC5 protein (CDC5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105086.10.0myb2
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A1D6N2M10.0A0A1D6N2M1_MAIZE; CDC5 protein
TrEMBLA0A3L6FAS30.0A0A3L6FAS3_MAIZE; Cell division cycle 5-like protein
STRINGAC203535.4_FGP0010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44163553
Representative plantOGRP39481723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]