PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC202864.3_FGP002
Common NameGATA25
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 382aa    MW: 39652.5 Da    PI: 5.9222
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC202864.3_FGP002genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.6e-18255289135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  AC202864.3_FGP002 255 CLHCETDKTPQWRTGPLGPKTLCNACGVRYKSGRL 289
                        99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.3E-17249299IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.387249285IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-14250286IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.42E-15251312No hitNo description
CDDcd002023.88E-14254301No hitNo description
PROSITE patternPS003440255280IPR000679Zinc finger, GATA-type
PfamPF003207.6E-16255289IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEVSAECAGG GSVKKEADLF LVDDLLDLPC DDDDEETVVG DWEGDGSKQA AVLDRGCGAG  60
GEEGAAGNAS KNESSAVTAL DSCSNSISGS GLADGDFSGG LCEPYDQLAE LEWLSNYLGE  120
DNFPTEDLKK LQLITGIPPA ATAMAPAPAP AAAQAQPAAG VLPQEAPVLG KARSKRSRVA  180
PCSWASRLVV LPPPSPGSPP SAAISPSESG SGTAALAFPA RKPLKPAKKK EAPSPSLPPV  240
PNNAAAAGAG EGRRCLHCET DKTPQWRTGP LGPKTLCNAC GVRYKSGRLV PEYRPAASPT  300
FVVSKHSNSH RKVLELQRQK EAHPHHHHQY QPQQALAHVG AGGTLNLMHA PSPLLFDGPA  360
APLIGDDFLV HSHIGPDFRQ LI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.644390.0shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC202864.3_FG002
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC202864.3_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0546070.0BT054607.1 Zea mays full-length cDNA clone ZM_BFc0189F08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146093.10.0uncharacterized protein LOC100279625
TrEMBLB7ZZ650.0B7ZZ65_MAIZE; C2C2-GATA transcription factor
STRINGAC202864.3_FGP0020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-45GATA transcription factor 12