PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AC200124.3_FGP005 | ||||||||
Common Name | GRAS66 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 111aa MW: 12308.9 Da PI: 4.6744 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 72.2 | 1e-22 | 2 | 110 | 205 | 315 |
GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreiv 295 n+vl+ h+ll +++ + ++L l +s+ ++++ + e+e +ns ++ +rf+ al+yy++ fd + a+l+ + +r+k E++ ++rei+ AC200124.3_FGP005 2 NCVLAAHHLLYDETGAAV--VDFLGLARSTGATILLLGEHEDTLNSRRWEARFALALRYYATAFDVMgTAGLADAGPARAKAEEM-FAREIC 90 9*******9977766666..79*********************************************888999999*********.****** PP GRAS 296 nvvacegaerrerhetlekW 315 n va e a+r+er et++ W AC200124.3_FGP005 91 NTVAFEAADRFERYETFAGW 110 *******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 14.295 | 1 | 111 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.5E-20 | 2 | 110 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 111 aa Download sequence Send to blast |
MNCVLAAHHL LYDETGAAVV DFLGLARSTG ATILLLGEHE DTLNSRRWEA RFALALRYYA 60 TAFDVMGTAG LADAGPARAK AEEMFAREIC NTVAFEAADR FERYETFAGW W |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.34299 | 1e-101 | cell lignification| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | AC200124.3_FG005 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM) and elongating cells of young seedlings. Expressed in leaf joints, culms, internodes, stems, young panicles, primary roots and lateral roots. {ECO:0000269|PubMed:19220793}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AC200124.3_FGP005 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ728282 | 0.0 | KJ728282.1 Zea mays clone pUT6561 GRAS transcription factor (GRAS66) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020406475.1 | 2e-48 | LOW QUALITY PROTEIN: protein DWARF AND LOW-TILLERING | ||||
Swissprot | Q9LWU9 | 8e-36 | DLT_ORYSJ; Protein DWARF AND LOW-TILLERING | ||||
TrEMBL | K7UFS5 | 7e-74 | K7UFS5_MAIZE; GRAS transcription factor (Fragment) | ||||
STRING | AC200124.3_FGP005 | 1e-74 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6404 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G63100.1 | 2e-24 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | AC200124.3_FGP005 |
Publications ? help Back to Top | |||
---|---|---|---|
|