PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC200038.4_FGP011
Common NameLOC103632060
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 339aa    MW: 36429.9 Da    PI: 7.1831
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC200038.4_FGP011genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.88.7e-11161210155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        ++y GV  + +rgr+vA+ rd      + kr +lg f taeeA ++++   ++l+g
  AC200038.4_FGP011 161 PRYGGVL-RQRRGRYVARTRDR-----KgKRMWLGMFNTAEEAVRRYDSETRRLRG 210
                        6799**6.4558******9993.....34*******************99888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.7423572IPR001471AP2/ERF domain
SMARTSM003800.0483593IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-53569IPR001471AP2/ERF domain
PfamPF008473.4E-5161203IPR001471AP2/ERF domain
SMARTSM003806.2E-14162224IPR001471AP2/ERF domain
PROSITE profilePS5103216.015162218IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-16162219IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-13162219IPR016177DNA-binding domain
CDDcd000189.56E-16163220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEEHRLRCNA TAPTGRVACG GKRKAAAAGA PAEPRYRGAL RWHRGRYVAW THDQKGKRMW  60
LDTFDTAEEG GQESQPMVGS PVSTTLPPKL VEAAAETLST FSFSDEADAG GGAKAAAGPL  120
KFVMQIHMEE HRPRCNATAS TGRVAGGGKR KAAAAGAPAE PRYGGVLRQR RGRYVARTRD  180
RKGKRMWLGM FNTAEEAVRR YDSETRRLRG PSVITNFPAT SDDRVPLPAP SLHVVDEHSF  240
AADESQPVVG SPVSTTPPLK PVDAAAETLS TFSVVDALLP QLVEDAFSFA GVPFNDDLPT  300
LQLGGLDYLA TDPALELGSL PMWPGVDGCR FSDIGDDDF
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC200038.4_FG011
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC200038.4_FGP011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277130.0KJ727713.1 Zea mays clone pUT5652 AP2-EREBP transcription factor (EREB123) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020396639.11e-102AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A1D6JRM70.0A0A1D6JRM7_MAIZE; Uncharacterized protein
STRINGAC200038.4_FGP0110.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131332332
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-13ERF family protein