PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC199820.4_FGP006 | ||||||||
Common Name | LOC103647818, MYBR29 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 153aa MW: 17833.1 Da PI: 5.6563 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.4 | 1.1e-10 | 107 | 150 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE+ ++++ +++G g+W I+r + ++t+ q+ s+ qk+ AC199820.4_FGP006 107 WTREEHRNFLRGLNMYGRGNWMYISRDFVPTKTPMQIYSHAQKF 150 *****************************9************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.62E-13 | 101 | 152 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 11.747 | 102 | 153 | IPR017884 | SANT domain |
SMART | SM00717 | 4.7E-7 | 103 | 153 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-8 | 105 | 146 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-11 | 106 | 152 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 2.59E-8 | 107 | 151 | No hit | No description |
Pfam | PF00249 | 5.4E-7 | 107 | 149 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MDPMFSSEWS VSEIKMAKSL IASRNTSSNL ASDDDASNKK HSDIVDELQA RFPWKGKHEV 60 IGLYVDLTME MINTPPEVGD DGLVLDDDNF GMPVEEQPQM KYTGRFWTRE EHRNFLRGLN 120 MYGRGNWMYI SRDFVPTKTP MQIYSHAQKF FRR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC199820.4_FG006 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC199820.4_FGP006 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728197 | 0.0 | KJ728197.1 Zea mays clone pUT6471 MYB-related transcription factor (MYBR29) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008670548.1 | 1e-113 | transcription factor KUA1 | ||||
TrEMBL | A0A060D7S7 | 1e-111 | A0A060D7S7_MAIZE; Duplicated homeodomain-like superfamily protein (Fragment) | ||||
STRING | AC199820.4_FGP006 | 1e-112 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 | Representative plant | OGRP2767 | 5 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61620.1 | 5e-17 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | AC199820.4_FGP006 |
Entrez Gene | 103647818 |