PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC199782.5_FGP003 | ||||||||
Common Name | TCP19, Zm.31339 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 343aa MW: 35431.5 Da PI: 4.9412 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 99.4 | 6.6e-31 | 86 | 167 | 7 | 88 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 r ++hTkv+gR+RR+R+ a caar+ L++ LG+++d++ti WLlqq +p+i+++tgt++ +a + + + + ++ ++ AC199782.5_FGP003 86 RYRDRHTKVEGRGRRIRMAAACAARVARLTRDLGHKSDGETIRWLLQQTEPSIIAATGTGTVPAIAITGTDGVLRLPAEPAS 167 678********************************************************88888444222222222211111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 21.612 | 87 | 141 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.7E-24 | 88 | 151 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MKGTPNEGQS DLSMESQAPG RGEEGTKALY LAPEVIGNGT AAGAVAVDAM VSVEAGGSGL 60 PKPEPVPVEF LGSGGLQLSK PRPAPRYRDR HTKVEGRGRR IRMAAACAAR VARLTRDLGH 120 KSDGETIRWL LQQTEPSIIA ATGTGTVPAI AITGTDGVLR LPAEPASEDA SGEQQEPAPK 180 RRRKLQPTRA AVGPAVPAPA AYYPVVADPR LQANGGGAIS VSSGLAPASA PAAPAGAIPF 240 IAIAAPRPSA AGDGKQMIPP AAMWMVPQQA GAGNQPTHYW AFTTNSEFLS YQQQSVFQQQ 300 VVYDGEQLVG DGESQGQQTG GYQHGDGEGV DEEIAVTDSS SEE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 178 | 184 | PKRRRKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.31339 | 0.0 | ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC199782.5_FG003 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells. {ECO:0000269|PubMed:9338963}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC199782.5_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726827 | 0.0 | KJ726827.1 Zea mays clone pUT3366 TCP transcription factor (TCP19) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131265.2 | 0.0 | uncharacterized protein LOC100192578 | ||||
Swissprot | A2YXQ1 | 8e-74 | PCF2_ORYSI; Transcription factor PCF2 | ||||
Swissprot | Q6ZBH6 | 8e-74 | PCF2_ORYSJ; Transcription factor PCF2 | ||||
TrEMBL | A0A060D3Z8 | 0.0 | A0A060D3Z8_MAIZE; TCP transcription factor (Fragment) | ||||
STRING | AC199782.5_FGP003 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3912 | 31 | 67 | Representative plant | OGRP3178 | 11 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 1e-21 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | AC199782.5_FGP003 |
Publications ? help Back to Top | |||
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