PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC199571.3_FGP004 | ||||||||
Common Name | ZEAMMB73_732401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 255aa MW: 27235.3 Da PI: 7.6926 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.5 | 1.3e-07 | 149 | 180 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g W+ eEd++l d++ ++G g+W++ + + g AC199571.3_FGP004 149 KGLWSLEEDQKLRDYILLHGHGCWSALPMKAG 180 678**********************9998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.47E-6 | 144 | 178 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.26 | 144 | 175 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-9 | 148 | 180 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.82E-4 | 152 | 181 | No hit | No description |
PROSITE profile | PS51352 | 8.987 | 174 | 255 | IPR013766 | Thioredoxin domain |
SuperFamily | SSF52833 | 3.21E-18 | 189 | 253 | IPR012336 | Thioredoxin-like fold |
Gene3D | G3DSA:3.40.30.10 | 6.9E-19 | 190 | 253 | IPR012336 | Thioredoxin-like fold |
Pfam | PF00085 | 6.4E-16 | 192 | 253 | IPR013766 | Thioredoxin domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045454 | Biological Process | cell redox homeostasis | ||||
GO:0005623 | Cellular Component | cell | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009074 | anatomy | style | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGASAPTAAL SSAPPLPLSL SVANGQEEEE GSAGPPLVAM ASQCAPPLPP RPRAAAPFLL 60 GHTPPHARPP RCAALTPSVR AAARPCFLAS TRVLLRPQSE EAPASCSWSA SDPLLCASPA 120 SALLVAWRRR HSPAMGCKAC DKPKPNYRKG LWSLEEDQKL RDYILLHGHG CWSALPMKAG 180 TNVKIAAIPS SVVVLTSETF DSIVLDEFYA PWCGHCKHLA PIYEKLASVF KQDDSVVIAN 240 LDADKHTDLD EKYAF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.162525 | 0.0 | meristem| root| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC199571.3_FG004 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC199571.3_FGP004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035055 | 0.0 | BT035055.1 Zea mays full-length cDNA clone ZM_BFb0035A08 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008662985.1 | 0.0 | protein disulfide isomerase-like 2-1 | ||||
TrEMBL | A0A3L6E3A3 | 1e-176 | A0A3L6E3A3_MAIZE; Protein disulfide isomerase-like 2-1 | ||||
STRING | AC199571.3_FGP004 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48920.1 | 2e-11 | myb domain protein 45 |
Link Out ? help Back to Top | |
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Phytozome | AC199571.3_FGP004 |