PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC198937.4_FGP005
Common NameLOC103653477, ZEAMMB73_733815
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 381aa    MW: 42497.7 Da    PI: 7.8845
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC198937.4_FGP005genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.21.4e-52171441128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        l+pGfrFhPtdeelv++yL++k+++k++++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d+++
  AC198937.4_FGP005  17 LMPGFRFHPTDEELVSFYLRRKIQQKPISI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSVRPNRVTAAGFWKATGTDRPI 107
                        689***************************.89***************9888999************************************* PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +s+ +++ vglkk+Lvfy+gra +g ktdW+mhe+rl
  AC198937.4_FGP005 108 YSSeGTKCVGLKKSLVFYRGRAARGMKTDWMMHEFRL 144
                        **956667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-5812172IPR003441NAC domain
PROSITE profilePS5100557.40617172IPR003441NAC domain
PfamPF023659.3E-2619144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEGERNDINV QRSDEILMPG FRFHPTDEEL VSFYLRRKIQ QKPISIELIR QLDIYKYDPW  60
DLPKLASTGE KEWYFYCPRD RKYRNSVRPN RVTAAGFWKA TGTDRPIYSS EGTKCVGLKK  120
SLVFYRGRAA RGMKTDWMMH EFRLPSLTDP KRPVDKTIPL NDSWTICRIF KKTSSMAQRA  180
LSHTWGPPLP GATAEADMFA ALQSVQASEL ALERSLSLQA APPAPAAGQF TSTHGLHSQH  240
HHQQQKGVNN PSLDGASCRL INFTSSPSEE PENFPITFPF EVQAPHRAAA PVFFGAHPDN  300
RLGGFVVDSS ADVSGCIGGR SQDSSTGKPS SGFSANSSDW ETAGRINFPF DLGADSSEEW  360
RCSIPWESFL SPAAVQAELP R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-5381754168NO APICAL MERISTEM PROTEIN
1ut4_B1e-5381754168NO APICAL MERISTEM PROTEIN
1ut7_A1e-5381754168NO APICAL MERISTEM PROTEIN
1ut7_B1e-5381754168NO APICAL MERISTEM PROTEIN
3swm_A2e-5381757171NAC domain-containing protein 19
3swm_B2e-5381757171NAC domain-containing protein 19
3swm_C2e-5381757171NAC domain-containing protein 19
3swm_D2e-5381757171NAC domain-containing protein 19
3swp_A2e-5381757171NAC domain-containing protein 19
3swp_B2e-5381757171NAC domain-containing protein 19
3swp_C2e-5381757171NAC domain-containing protein 19
3swp_D2e-5381757171NAC domain-containing protein 19
4dul_A1e-5381754168NAC domain-containing protein 19
4dul_B1e-5381754168NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC198937.4_FG005
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC198937.4_FGP005
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678593.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9ZVH01e-100FEZ_ARATH; Protein FEZ
TrEMBLK7TWF10.0K7TWF1_MAIZE; Putative NAC domain transcription factor superfamily protein
STRINGAC198937.4_FGP0050.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33663882
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-101NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]