PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC198518.3_FGP005
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 304aa    MW: 31944 Da    PI: 4.4503
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC198518.3_FGP005genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.19.9e-112292691055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  AC198518.3_FGP005 229 RKRRERINERLKVLQSLVPNG-----TKVDMSTMLEEAVHYVKFLQ 269
                        9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.792219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-14223285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12224280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-13228273No hitNo description
PfamPF000104.1E-8229269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEDGGLVSEA GAWAELGTGG DESEELVAQL LGAFFRSHGE EGRHQLLWSD DQASSDDVHG  60
DGSLAVPLAY DGCCGYLSYS GSNSDELPLG SSSRAAPAGG PPEELLGAAE TEYLNNVAAA  120
DHPFFKWCGN GEGLDGPTSV VGTLGLGSGR KRARKKSGDE DEDPSTAIAS GSGPTSCCTT  180
SDSDSNASPL ESADAGARRP KGNENARAAG RGAAAATTTT AEPQSIYARK RRERINERLK  240
VLQSLVPNGT KVDMSTMLEE AVHYVKFLQL QIRLLSSDDT WMYAPIAYNG MGIGIDLRMH  300
GQDR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC198518.3_FG005
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC198518.3_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020406706.10.0transcription factor bHLH54 isoform X2
TrEMBLA0A1D6MVK70.0A0A1D6MVK7_MAIZE; Transcription factor bHLH54
STRINGAC198518.3_FGP0050.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.16e-44bHLH family protein