PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC198506.3_FGP001
Common NameZEAMMB73_831934
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 378aa    MW: 39710.6 Da    PI: 6.6944
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC198506.3_FGP001genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015253276123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        ++C  CgksFs++  L  H ++ H
  AC198506.3_FGP001 253 HTCRTCGKSFSTHQALGGHVSSsH 276
                        79**************99988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355786183IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.31E-7251276No hitNo description
PfamPF139122.7E-5252276IPR007087Zinc finger, C2H2
SMARTSM003550.069253276IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637253281IPR007087Zinc finger, C2H2
PROSITE patternPS000280255276IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-7323350No hitNo description
PfamPF139122.9E-9328352IPR007087Zinc finger, C2H2
SMARTSM003550.25328350IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280330350IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MNARVLQFYL LAAEAAAAED AAHGAEGNEP PKALLLKIQA QGTAVEPALR QGSGLAPTMG  60
TQCLECECDK VFASKKAMFV HLQRDYNGAT SPTINMAAAA ATTAVEKKLW DLWEEAGLRG  120
RPPVAPLQAS RCCSSQEDQE EVEAAMTLLE MASHGRTSSE TQQQSVEPVR APNAASGQHI  180
VKTSAVEQVV AVQVVLPTIP PIFPSLDSSA GDKKAKKRRV MNHPEEAAAS TSPLPLPPKG  240
AARTPAPVSG KTHTCRTCGK SFSTHQALGG HVSSSHVKGK TTSVRHDGQS AGNGNITIPD  300
SAGAFQERQD AQPSPAQAPT PQTTQASHVC DVCSLTFTSG QALGGHMGMH RKPAAPVLEP  360
EYFDLNELPG QGENDNQP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1224693e-71shoot| silk
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC198506.3_FG001
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC198506.3_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9513277e-69EU951327.1 Zea mays clone 695636 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020401074.10.0uncharacterized protein LOC109942918
TrEMBLA0A1D6J8G80.0A0A1D6J8G8_MAIZE; OSJNBa0089K21.8-like protein
STRINGAC198506.3_FGP0010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425
Representative plantOGRP1097248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-10C2H2 family protein