PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC198403.3_FGP001 | ||||||||
Common Name | EREB106, ZEAMMB73_596429, Zm.132316 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 22827.6 Da PI: 4.4355 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.2 | 4.1e-18 | 17 | 65 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +k +g+Wv+eIr+p gk++r++lg+f ++e+Aa a++ a+++l+g AC198403.3_FGP001 17 YRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPEMAAVAHDVAALRLRG 65 9****999.**********8...557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.7E-12 | 16 | 65 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-31 | 16 | 73 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-36 | 16 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.393 | 16 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 16 | 73 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.71E-30 | 17 | 73 | No hit | No description |
PRINTS | PR00367 | 3.2E-12 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-12 | 55 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MVLDNSAPGV VAAGQSYRGV RKRKWGKWVS EIREPGKKTR IWLGSFESPE MAAVAHDVAA 60 LRLRGREARL NFPGLVHRFR RPATAEPDDV RAAALEAAAQ VRFRPDLVAM QASGGEGGCC 120 FGGAGGSDDT GSPEPLAAGE DDVAWDVLLG TDVEVVESPK MWDELAEAML VAPPAWEGDM 180 EDTDDWAQGN LWDLPVWALG PTGRCSFTSF GF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-17 | 12 | 77 | 1 | 67 | ATERF1 |
3gcc_A | 1e-17 | 12 | 77 | 1 | 67 | ATERF1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC198403.3_FG001 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00227 | DAP | Transfer from AT1G71450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC198403.3_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727511 | 0.0 | KJ727511.1 Zea mays clone pUT5370 AP2-EREBP transcription factor (EREB106) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151893.1 | 1e-126 | uncharacterized protein LOC100285530 | ||||
TrEMBL | A0A1D6PRI6 | 1e-150 | A0A1D6PRI6_MAIZE; Putative AP2/EREBP transcription factor superfamily protein | ||||
TrEMBL | K7TV92 | 1e-150 | K7TV92_MAIZE; AP2-EREBP transcription factor (Fragment) | ||||
STRING | AC198403.3_FGP001 | 1e-150 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 1e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | AC198403.3_FGP001 |