PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC198081.2_FGP005
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 121aa    MW: 12845.4 Da    PI: 6.7741
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC198081.2_FGP005genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000211234123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ykC+ C k+F++   L  H  +H
  AC198081.2_FGP005 12 YKCSVCEKVFTSYQALGGHKTSH 34
                       9***********99998888777 PP

2zf-C2H216.13.2e-055880123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C+++Fs+  +L  H+ +H
  AC198081.2_FGP005 58 HQCSLCPRTFSSGQMLGEHMTSH 80
                       79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.0E-41235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0091234IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.64E-101280No hitNo description
PROSITE profilePS5015710.1181239IPR007087Zinc finger, C2H2
PfamPF139122.6E-131236IPR007087Zinc finger, C2H2
PROSITE patternPS0002801434IPR007087Zinc finger, C2H2
SMARTSM003550.0165880IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7415885IPR007087Zinc finger, C2H2
PfamPF139121.5E-85882IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MGPTSANMAD GYKCSVCEKV FTSYQALGGH KTSHRKPPAA AAPSDKASSS GTAHEKLHQC  60
SLCPRTFSSG QMLGEHMTSH RKPSPPVMVR DFDLNMPSEA EPEAAPPDVK RACTDDDVAG  120
D
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC198081.2_FG005
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC198081.2_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020404737.15e-41zinc finger protein 36
TrEMBLA0A1D6I4527e-84A0A1D6I452_MAIZE; Zinc finger protein AZF1
STRINGAC198081.2_FGP0051e-84(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.19e-15C2H2 family protein