PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC198081.2_FGP005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 121aa MW: 12845.4 Da PI: 6.7741 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 12 | 34 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C k+F++ L H +H AC198081.2_FGP005 12 YKCSVCEKVFTSYQALGGHKTSH 34 9***********99998888777 PP | |||||||
2 | zf-C2H2 | 16.1 | 3.2e-05 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++Fs+ +L H+ +H AC198081.2_FGP005 58 HQCSLCPRTFSSGQMLGEHMTSH 80 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 9.0E-4 | 12 | 35 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.009 | 12 | 34 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.64E-10 | 12 | 80 | No hit | No description |
PROSITE profile | PS50157 | 10.118 | 12 | 39 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.6E-13 | 12 | 36 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 14 | 34 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.741 | 58 | 85 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-8 | 58 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MGPTSANMAD GYKCSVCEKV FTSYQALGGH KTSHRKPPAA AAPSDKASSS GTAHEKLHQC 60 SLCPRTFSSG QMLGEHMTSH RKPSPPVMVR DFDLNMPSEA EPEAAPPDVK RACTDDDVAG 120 D |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC198081.2_FG005 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC198081.2_FGP005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020404737.1 | 5e-41 | zinc finger protein 36 | ||||
TrEMBL | A0A1D6I452 | 7e-84 | A0A1D6I452_MAIZE; Zinc finger protein AZF1 | ||||
STRING | AC198081.2_FGP005 | 1e-84 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10028 | 23 | 35 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 9e-15 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | AC198081.2_FGP005 |