PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC196475.3_FGP005
Common Namepco115996, ZEAMMB73_506737
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 633aa    MW: 70664 Da    PI: 4.6623
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC196475.3_FGP005genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM972.8e-3058552128
                NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ ++sk    k++++g+kktLvf++grapkge+t W+mheyr 
  AC196475.3_FGP005   5 RSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRIIKSKgdkrKQHTIGMKKTLVFHRGRAPKGERTGWIMHEYRT 85 
                        45778**************************************988777777***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.1231106IPR003441NAC domain
SuperFamilySSF1019411.96E-345106IPR003441NAC domain
PfamPF023652.8E-15884IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
KSLIRSDDPE WFFFAPKDRK YPNGSRSNRA TEAGYWKATG KDRIIKSKGD KRKQHTIGMK  60
KTLVFHRGRA PKGERTGWIM HEYRTTEPEF ESGEQGGYVL YRLFRKQEEK TERSSPEEVD  120
RSGYSPTPSR SSPDNLEANE EANTPLNKES PESALHESPI ELPKSVETNG GSMTRWLADR  180
NDNLMVTAPD VSHIPFHGHA AGVAKVDPSV GASGHLVNPH NGNDDYNKFV SDFTPILPLE  240
NAFFTDIQQG AFGFDGIMNP LDPLDAFLNQ TLVDPDEHSS TTSKVQYDSD IPTEFENHWN  300
MKVEPQDDQC WWANIGFEPD EPNPLLPCDT TDQDILSVDS GADSFNELFN SMEETGIIVR  360
PQQLDSTVQP NHVFASQGNA ARRLRLQVES REIITKDESE DEVSCVLTPD CLNDSVEEST  420
AEKDVASDGD EAESTGIVIR SHHPAPRSSS ESSFTQQGTA MQRLRLQSGL NKGQRPSTDD  480
SSSCIIDEPG SQHKAEKAEI EEDASTNLAG SADDLPGNIH DDEQKNIPEH GAEMTSPEAK  540
SVLRLRKTSE EGNKDVKQES CLEPHVRAPM QKGGFQSYII WLVLPVALLL LLCVGTYGWN  600
FRFLNPVTDG LLICWRVRIR LDMPQHGLRG YKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-291010772166NO APICAL MERISTEM PROTEIN
1ut4_B2e-291010772166NO APICAL MERISTEM PROTEIN
1ut7_A2e-291010772166NO APICAL MERISTEM PROTEIN
1ut7_B2e-291010772166NO APICAL MERISTEM PROTEIN
3swm_A2e-291010775169NAC domain-containing protein 19
3swm_B2e-291010775169NAC domain-containing protein 19
3swm_C2e-291010775169NAC domain-containing protein 19
3swm_D2e-291010775169NAC domain-containing protein 19
3swp_A2e-291010775169NAC domain-containing protein 19
3swp_B2e-291010775169NAC domain-containing protein 19
3swp_C2e-291010775169NAC domain-containing protein 19
3swp_D2e-291010775169NAC domain-containing protein 19
4dul_A2e-291010772166NAC domain-containing protein 19
4dul_B2e-291010772166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.738420.0cell culture| ear| embryo| endosperm| leaf| meristem| ovary| pericarp| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC196475.3_FG005
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC196475.3_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550640.0BT055064.1 Zea mays full-length cDNA clone ZM_BFb0097A01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020407094.10.0uncharacterized protein LOC100279888 isoform X2
TrEMBLA0A1D6PVX30.0A0A1D6PVX3_MAIZE; Putative NAC domain transcription factor superfamily protein
STRINGAC196475.3_FGP0050.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Representative plantOGRP1297045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.21e-44NAC 014