PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC194972.2_FGP001
Common NameLOC103652559
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 297aa    MW: 30716.9 Da    PI: 8.9069
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC194972.2_FGP001genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00019158180123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C+ Cg sF+++  L  H+  H
  AC194972.2_FGP001 158 YTCKLCGASFPTHQGLGGHMAAH 180
                        9******************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.19E-7158222No hitNo description
SMARTSM003550.014158180IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743158185IPR007087Zinc finger, C2H2
PfamPF139127.4E-8158181IPR007087Zinc finger, C2H2
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
PROSITE profilePS501578.871200228IPR007087Zinc finger, C2H2
SMARTSM003554.7200222IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-5200223IPR007087Zinc finger, C2H2
PROSITE patternPS000280202222IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAGSSEDGRR RSLADLCDAA ILGRWGVTGR RRRSGCWSKQ AASSSSSAQS VQSMAVVVAN  60
PEIVLQPTPL PTIVTPNPSS PVHMEPATPS PSSVPIASTM TNVSNESSSS FAKPSPPTEA  120
VTHLDVAPAL PSPPPAEVHA TSSVPPPPLP GPQNPNGYTC KLCGASFPTH QGLGGHMAAH  180
KTRELAAVPC LRDAKPVKEH GCRTCGAVFL TGYKLGGHMR KHYTGPKIVP KKKPRLDDVV  240
TVQLLPARTV EPAPRPVLLF GVDIGAGAQM PAAAQGEGSS ATATQAPSEE PPAGEQQ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC194972.2_FG001
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC194972.2_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6NGZ70.0A0A1D6NGZ7_MAIZE; Uncharacterized protein
STRINGAC194972.2_FGP0010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Representative plantOGRP1012237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-14C2H2 family protein