PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC193767.3_FGP003
Common NameLOC103642222, ZEAMMB73_636851
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 366aa    MW: 41065.4 Da    PI: 9.9398
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC193767.3_FGP003genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.77.1e-21117218199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+ +l++ d+++sg++++p+ ++e++      + +++e ++l+++d++g+ W++ +iy  k +++ lt+GW+eFv+a+ L +gD++vF+  +
  AC193767.3_FGP003 117 FVNELLHRDTSTSGMFCIPRYCTEHIfpkldlNANPPE-QDLVMRDTRGKPWQFHHIYVVKIRQHRLTAGWSEFVDAKLLVAGDTIVFM--R 205
                        67789999***********9999777****99555555.38*****************99999**************************..4 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                        + ++ l ++++rk
  AC193767.3_FGP003 206 HPNGDLILGLRRK 218
                        5888889999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-25113220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-20113218IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-16116217No hitNo description
SMARTSM010196.6E-12117219IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929117219IPR003340B3 DNA binding domain
PfamPF023621.9E-17117218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MATEPALPQG HGDGDSIVDR DVWLACAVPF SRVPTVGAEV YYFPDGHAEQ HLLAPLPASH  60
RFPCTCTVTD VSLGAEDRTD EVFAKISLRP GPAAASRPEP GPGPGSSNST RQGLSYFVNE  120
LLHRDTSTSG MFCIPRYCTE HIFPKLDLNA NPPEQDLVMR DTRGKPWQFH HIYVVKIRQH  180
RLTAGWSEFV DAKLLVAGDT IVFMRHPNGD LILGLRRKAT RTSWRPRASP PWAGPSRSPT  240
SRDRPPWSSS SRTARWIARS PPAGNEARRL EDENKQRSVW VDGHVVKANR QNIWRMLEIH  300
WWGDSPASAS PPSRAMSRFV NVWQVQRVAW FLPRPYYWRV RKKPGPGHEH DIGGATNSCN  360
AKPLSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-39721740258Auxin response factor 5
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC193767.3_FG003
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC193767.3_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0642534e-52BT064253.1 Zea mays full-length cDNA clone ZM_BFc0153A12 mRNA, complete cds.
GenBankEU9474984e-52EU947498.1 Zea mays clone 345112 mRNA sequence.
GenBankKJ7269504e-52KJ726950.1 Zea mays clone pUT3644 ARF transcription factor (ARF33) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008663754.20.0LOW QUALITY PROTEIN: auxin response factor 13
TrEMBLK7TTV60.0K7TTV6_MAIZE; Auxin response factor 17
STRINGAC193767.3_FGP0030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.12e-41auxin response factor 16