PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC190734.2_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 359aa MW: 38894.3 Da PI: 7.178 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 155.4 | 3.3e-48 | 99 | 256 | 1 | 136 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 aa++kd hski+T++ +RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WL++ +k+ai+e++ + +++sec e++sss s++ + ++ AC190734.2_FGP003 99 AAPRKDWHSKICTAGAMRDRRMRLSLDVARKFFELQDMLGFDKASKTVQWLINTSKAAIQEIMAD--DASSECvEDGSSSLSVDGKYNPael 188 689**************************************************************..6666799999999999955555666 PP TCP 89 ......................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 kaa+++++++ks ++a+ ++ke+rakar+rarert+ek+r+++++ AC190734.2_FGP003 189 gggneksngnacsewkkpamvrKAATTTKPPRKSGNNAH--PVPDKETRAKARERARERTKEKHRMRWVK 256 77777777899******9987333333334444444444..88888*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 33.033 | 102 | 160 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.4E-41 | 102 | 252 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51370 | 11.593 | 232 | 249 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MDSPLYQQLQ LSPPSPKPDQ SSSFYCYPCS PPFAAADASF HLSYHIGSSA TDTHPQTVVN 60 SPEIPVFPLM EQTPAPATEQ GAGACGAQGA GVSLDRAYAA PRKDWHSKIC TAGAMRDRRM 120 RLSLDVARKF FELQDMLGFD KASKTVQWLI NTSKAAIQEI MADDASSECV EDGSSSLSVD 180 GKYNPAELGG GNEKSNGNAC SEWKKPAMVR KAATTTKPPR KSGNNAHPVP DKETRAKARE 240 RARERTKEKH RMRWVKLASA IDVEVAAASV ASDRPSSNNL SHHSLSSMNI PRAAAAELEE 300 RERSLLAPNN RGRMQEITGA SDVVGFGNGG GYGCDDGNYY CQEQWELGGV VFQQNSGFY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.13935 | 0.0 | ear| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC190734.2_FG003 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in axillary inflorescence primordia, immature internodes below these primordia, and immature husk surrounding these primordia. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:9087405}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in apical dominance. Represses the growth of axillary organs (e.g. lateral branches), but enables the formation of female inflorescences. Regulates the number and length of axillary branches. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:16642024, ECO:0000269|PubMed:17947410, ECO:0000269|PubMed:8536981, ECO:0000269|PubMed:9087405}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC190734.2_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF466646 | 0.0 | AF466646.1 Zea mays putative transposase (Z195D10.1) gene, partial cds; glycyl-tRNA synthetase (Z195D10.2), ornithine carbamoyltransferase (Z195D10.3), putative gag protein (Z195D10.5), putative SET-domain transcriptional regulator (Z195D10.7), putative oxysterol-binding protein (Z195D10.8), putative polyprotein (Z195D10.9), putative oxysterol-binding protein (Z195D10.10), putative gag-pol polyprotein (Z195D10.11), putative phosphatidylinositol-4-phosphate-5-kinase (Z195D10.12), hypothetical protein (Z195D10.15), putative gag-pol polyprotein (Z195D10.16), putative polyprotein (Z195D10.17), putative retrotransposon protein (Z195D10.18), and prpol (Z195D10.19) genes, complete cds; and putative teosinte branched2 (Z195D10.20) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008665277.1 | 1e-167 | transcription factor TEOSINTE BRANCHED 1-like | ||||
Swissprot | Q93WI2 | 1e-168 | TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1 | ||||
TrEMBL | A0A1D6GJP6 | 0.0 | A0A1D6GJP6_MAIZE; Putative teosinte branched2 | ||||
STRING | AC190734.2_FGP003 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7253 | 36 | 51 | Representative plant | OGRP12650 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 4e-23 | TCP domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | AC190734.2_FGP003 |
Publications ? help Back to Top | |||
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