PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC185108.3_FGP011 | ||||||||
Common Name | LOC103634372 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 198aa MW: 20189.8 Da PI: 9.9719 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.5 | 5e-05 | 43 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cgk F + L H +H AC185108.3_FGP011 43 FRCPICGKAFASYQALGGHKASH 65 89**********99998888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.6E-13 | 42 | 67 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.49E-8 | 43 | 65 | No hit | No description |
SMART | SM00355 | 0.0062 | 43 | 65 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.616 | 43 | 70 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.49E-8 | 102 | 129 | No hit | No description |
Pfam | PF13912 | 5.9E-8 | 106 | 129 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.3 | 107 | 129 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.785 | 107 | 134 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 109 | 129 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MDQDDYLSLC LAAALVAASQ QAAGDAPPLR ARAAASELRP LHFRCPICGK AFASYQALGG 60 HKASHRKPAA AAAAYDGKAP SSPSSSGQHQ KGAVAAGIGG ASAGGRHVCT VCHRYFATGQ 120 ALGGHKRFHY LHGPSVPASS LPPSTAGAAA GVGWLDLNLT PLAPDVSFAG VRRRRGEDDE 180 VQSPLPLPAK KHRASTSA |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC185108.3_FG011 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC185108.3_FGP011 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008654133.1 | 1e-138 | zinc finger protein 36 | ||||
TrEMBL | A0A1D6III5 | 1e-137 | A0A1D6III5_MAIZE; Zinc finger protein AZF2 | ||||
STRING | AC185108.3_FGP011 | 1e-138 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14898 | 17 | 18 | Representative plant | OGRP19614 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04340.1 | 3e-23 | zinc finger of Arabidopsis thaliana 6 |
Link Out ? help Back to Top | |
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Phytozome | AC185108.3_FGP011 |
Entrez Gene | 103634372 |