PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC184831.3_FGP005
Common NameGATA36, LOC103654940, LOC103654941, ZEAMMB73_720445, ZEAMMB73_950297
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 281aa    MW: 29809.6 Da    PI: 10.9058
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC184831.3_FGP005genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.42.5e-15242276135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        CsnCg+t+TplWR g+dg+ tLCn CGl+  ++++
  AC184831.3_FGP005 242 CSNCGSTETPLWRTGSDGSATLCNKCGLRLSRNRQ 276
                        *****************************988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-6236280IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.66E-12236273No hitNo description
PROSITE profilePS5011413.138236281IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-14240276IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.32E-11241270No hitNo description
PfamPF003202.9E-12242274IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MRQLSYLSGL DGLDDGVADC DGSCGLRDDG PPCLLHSGLC CPIGPLDDET DTVAIAIDND  60
KELLQDLAVA AGRVAASPLS SGNSPSSSAV ETTTTLPPTP WRFVVPRRKR RKRRDRRPVV  120
MRGSIRPGIP TLHAAAMSSS SSSSGNNRPC SLTAETSSPP QLWRLVVPTR KRDRRPVVMR  180
GSIKRPCSLG TTPGIPTPHA AGNSNPSSSS GGGSTGARRQ LESLQVRPRP PPTNRQRVQR  240
VCSNCGSTET PLWRTGSDGS ATLCNKCGLR LSRNRQAAQA S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107113RKRRKRR
2107114RKRRKRRD
3108116KRRKRRDRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC184831.3_FG005
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC184831.3_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284110.0KJ728411.1 Zea mays clone pUT6716 C2C2-GATA transcription factor (GATA36) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008679967.10.0transcription factor elt-1
TrEMBLK7USP10.0K7USP1_MAIZE; C2C2-GATA transcription factor (Fragment)
STRINGAC184831.3_FGP0050.0(Zea mays)
STRINGAC184831.3_FGP0080.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-08GATA family protein