PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC177924.2_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 275aa MW: 29928.9 Da PI: 10.2386 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.8 | 9.2e-09 | 232 | 271 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR++i++++ L++l+P++ K +Ka++L +A+eY k Lq AC177924.2_FGP001 232 LRRSKIKEKMKALQSLIPNS-----NKIDKASMLHEAIEYPKTLQ 271 6******************7.....5**************88887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.15 | 221 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-10 | 231 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-10 | 231 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.2E-6 | 232 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.53E-7 | 233 | 271 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MDSSPPRVSV SMSLSASEAT TAASAEVATT NTEEAPARES SDESSLLARL SVPSARALCS 60 SRDQSTERLL EEDTALVRKK CAEKSASAPR TPPGNRSSGA ARSPRQAKVR GLKRFLSFGR 120 KHKGWEVTVI DCTSTPVPSP AHDASNRWQP ACGSVKRRIG SSNAVFDDTG HGYPIGVKAV 180 EEEQGLGLGA LHEEHISMII YHCSKNSVTK RQTKKSLTAS IYARSIQGYK QLRRSKIKEK 240 MKALQSLIPN SNKIDKASML HEAIEYPKTL QYISF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.4138 | 1e-162 | ear |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC177924.2_FG001 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC177924.2_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU948855 | 1e-159 | EU948855.1 Zea mays clone 387658 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008646358.1 | 8e-70 | uncharacterized protein LOC103627824 isoform X1 | ||||
Refseq | XP_008646359.1 | 8e-70 | uncharacterized protein LOC103627824 isoform X2 | ||||
TrEMBL | A0A1D6HM99 | 2e-68 | A0A1D6HM99_MAIZE; Uncharacterized protein | ||||
TrEMBL | A0A1D6HMA0 | 2e-68 | A0A1D6HMA0_MAIZE; Uncharacterized protein | ||||
TrEMBL | A0A3L6EKT8 | 2e-68 | A0A3L6EKT8_MAIZE; Uncharacterized protein | ||||
STRING | AC177924.2_FGP001 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP258 | 16 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67110.1 | 3e-14 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | AC177924.2_FGP001 |