PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC165171.2_FGP002
Common NameLOC100191206, WRKY120
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 337aa    MW: 36825.1 Da    PI: 5.5232
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC165171.2_FGP002genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52.1e-31129185258
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                        +Dgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers+++p+++++tYeg H h
  AC165171.2_FGP002 129 EDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERSTDEPDTLVVTYEGLHLH 185
                        8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.255123188IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-28125186IPR003657WRKY domain
SuperFamilySSF1182904.18E-26126186IPR003657WRKY domain
SMARTSM007747.3E-36128187IPR003657WRKY domain
PfamPF031064.5E-25129185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEEEEGSSTS SVAVPVPPPP NKYDSWTTDP EELMMMMVDE AAVQQEGPRR RRDSMLNKLI  60
STVYSGPTIS DIESALSFTG GGDVDARNYN NSSAGPGALS SPEKVLMSKM ENKYTLKIKT  120
CGNGSSLAED GYKWRKYGQK SIKNSPNPRS YYRCTNPRCN AKKQVERSTD EPDTLVVTYE  180
GLHLHYTYSH FLHHQQPPPQ PKKPKLGAGP PQQPIVVMDD DLLHGPAQQD IITTGPLGAA  240
VMAPAPAPPP AAASFCYDLD DDVPAFFDDH DHHHHQQQHI TNGGLLEDMV PLLVRRPCTT  300
TTTTSAGSTS PDLSASSSVS WNPTSPYIDM AILSNIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-191271851371WRKY transcription factor 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC165171.2_FG002
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC165171.2_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0332400.0BT033240.1 Zea mays full-length cDNA clone ZM_BFb0071M13 mRNA, complete cds.
GenBankBT0624330.0BT062433.1 Zea mays full-length cDNA clone ZM_BFb0296J15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130113.10.0uncharacterized protein LOC100191206
TrEMBLB4F8020.0B4F802_MAIZE; Putative WRKY transcription factor 49
STRINGAC165171.2_FGP0020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.12e-43WRKY DNA-binding protein 49