PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC149829.2_FGP004 | ||||||||
Common Name | umc1714, ZEAMMB73_240664, Zm.81099 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 87aa MW: 9776.03 Da PI: 8.5173 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.8 | 1.6e-07 | 13 | 54 | 14 | 54 |
HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54 d+iN+ +++L+ llP++s + ++ + s + L++++ Y+ksL AC149829.2_FGP004 13 DEINELISKLQALLPESSrRRNASRSSASKLLKETCAYVKSL 54 68**************6647777889**************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.848 | 1 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-8 | 13 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-8 | 13 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.7E-5 | 13 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MSSGGRRGRI SDDEINELIS KLQALLPESS RRRNASRSSA SKLLKETCAY VKSLHREVDD 60 LSERLSGLME TMDNDSPQAE IIRSLLR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.81099 | 1e-146 | pollen |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC149829.2_FG004 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}. | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC149829.2_FGP004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969859 | 1e-143 | EU969859.1 Zea mays clone 336524 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151208.1 | 6e-55 | uncharacterized protein LOC100284841 | ||||
Swissprot | A2XD15 | 1e-33 | ILI3_ORYSI; Transcription factor ILI3 | ||||
Swissprot | Q10R47 | 1e-33 | ILI3_ORYSJ; Transcription factor ILI3 | ||||
TrEMBL | B6TXZ4 | 1e-53 | B6TXZ4_MAIZE; DNA binding protein | ||||
STRING | AC149829.2_FGP004 | 2e-54 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP928 | 38 | 145 | Representative plant | OGRP8216 | 4 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28857.1 | 1e-24 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | AC149829.2_FGP004 |
Entrez Gene | 100284841 |
Publications ? help Back to Top | |||
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