PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC149475.2_FGP005
Common NameLOC100381553, ZEAMMB73_575839
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 1522aa    MW: 167760 Da    PI: 6.3843
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC149475.2_FGP005genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00114121437123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                         ++C    C++ F ++ +L+ H r+ +
  AC149475.2_FGP005 1412 FQCDidLCDMAFETRAELNAHKRNiC 1437
                         899999****************9877 PP

2zf-C2H212.40.0004614371459323
                         ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                         C+   Cgk+Fs++ +LkrH+ +H
  AC149475.2_FGP005 1437 CTdeSCGKRFSSHKYLKRHQCVH 1459
                         77778***************998 PP

3zf-C2H213.20.0002714951521123
                         EEET..TTTEEESSHHHHHHHHHH..T CS
            zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                         ykC+  dCg++F+  s++ rH ++  H
  AC149475.2_FGP005 1495 YKCSapDCGQTFRYVSDYSRHRKKfnH 1521
                         99********************98666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005454.5E-122667IPR003349JmjN domain
PROSITE profilePS5118313.4812768IPR003349JmjN domain
PfamPF023754.4E-132861IPR003349JmjN domain
SMARTSM005588.8E-18221418IPR003347JmjC domain
PROSITE profilePS5118423.294221418IPR003347JmjC domain
SuperFamilySSF511975.22E-12225301No hitNo description
PfamPF023735.3E-16254324IPR003347JmjC domain
SuperFamilySSF511975.22E-12356414No hitNo description
SMARTSM003554814121434IPR015880Zinc finger, C2H2-like
SMARTSM003552.314351459IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.38314351464IPR007087Zinc finger, C2H2
PROSITE patternPS00028014371459IPR007087Zinc finger, C2H2
SuperFamilySSF576677.4E-614371472No hitNo description
Gene3DG3DSA:3.30.160.605.2E-614411465IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.6E-1014631517No hitNo description
PROSITE profilePS5015711.98814651494IPR007087Zinc finger, C2H2
SMARTSM003559.7E-414651489IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-1014661489IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014671489IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-1014901517IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.28114951522IPR007087Zinc finger, C2H2
SMARTSM003550.1214951521IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014971521IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 1522 aa     Download sequence    Send to blast
MSPPPAVATG GSGEPTVPAW LRGLPRAPEY RPTESEFADP IAFLSRVERE AAAYGICKVI  60
PPYPRPSRRF VFAHLNRSLV SSSEAANPTT ASGSSATAPS LPESAAVFTT RHQELGTPRR  120
GRPPPQVLKQ VWQSGERYTL DQFEAKSRAF SKIHLAGLRE PTPLEVESLF WKASADRPIY  180
IEYANDVPGS GFAAPKQSQR HKKRRRESDQ VEEGEKGSGW RLSGSPWNLQ AIARAPGSLT  240
RFMPDDVPGV TSPMVYIGML FSWFAWHVED HELHSLNFLH TGAPKTWYAV PGDRASELEE  300
VIRVHGYGGN PDRLGICPFS CSPSECFGCG LAGTSSEMAS VSIGSNVHDI IQTSDSYEFF  360
ADMYCFSFIE LIVMCYLLTM FIPALLDFHL HGFNCGEAAN FATPQWLKFA KEAAVRRAVM  420
NYLPMLSHQQ LLYLLAVSFI TRTPNVLSGI RSRLRDRKKE ERELLVKQEF LQDMISENKL  480
LCSFLEKKSI RHVVLWEPDL LPSSTALHSC SSGSKAPEKK SEDGCRIESS ERGTKDNSSD  540
GSAHMIGAQT KFMSGNSKSS GTASASMDEV NADTDDEDDL PFDLSIDSGS LTCVACGILG  600
YPFMAILQPS REVLEGISLA HTSRYKMSSE KDNCSNTIPC CPTDRCSFVP SRPSWPAEQQ  660
CLATPLGQAN ISHQNVNSHK DVCLRENEPN GPVPQCNNIS HSCRSENTLH SCSDRGKSEN  720
KISEDSLGPE VGEQTGKYVI NAQAAESSDG TINWNTYCTF ARPRIFCLQH ALEIEKLLEG  780
KGGVHGLIIC HSDFVKLKAL AISVAEEIEF QFDCTDISLA KASKSDLHLI NISIDDEGHE  840
EDGRDWTSQM GLNLKYSAKL RKEKSENQEQ SPLPFGGLLS CPSPVSVVPN LKWLCKRART  900
PYTVIGTMRG SSATATAAEL KPGVKTEIFT NGNVCEDDNR HHSFRQTGLE QPGGLQDCDK  960
PSCSEENGHG RHCLVNIPIA VAEYPMMHQV REGPVSVSTC NDSICLSGSL DLPPHASPVE  1020
VTRYLGCIQS TELSSLPAFS VQHFFNDEST SVEGSIDCVS NGCLESQDDI LGSRDERLQV  1080
QQYQEKMGLR NNPNMKSVDS HLIEGLAVSE GKHGETVAAF LENKERCAKT SYCSNTETKT  1140
TKSAIDNRLE THHLGTGPVK LNSSFNEMHS ADRQCSLVFG CLDSADVPAS TQALSVSPVL  1200
MSDEQQVDDA HSAVKAIEHL GNNLANIKHK SLHMDVLMLE DAQVASMAAV PGHEGESVEA  1260
GSNSFDILLG ALAEESKAAD APGKDEVGKA SLTLITLASN EPSVTEGRVV DVVETDTILG  1320
AGKDDKQLDQ PHGFHLSDLV SRCIGSSNRS DIICYVRRKH KRKRDYSCFV RSPCESLRPR  1380
SKPAVVEESE WSRTAEASFA KRGKRTQAVG SFQCDIDLCD MAFETRAELN AHKRNICTDE  1440
SCGKRFSSHK YLKRHQCVHS EMRPFKCPWE GCKMTFKWLW AQTEHVRVHT GERPYKCSAP  1500
DCGQTFRYVS DYSRHRKKFN HY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-49204528374Transcription factor jumonji (Jmj) family protein
6ip4_A2e-49204528374Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198204QRHKKRR
213561362RRKHKRK
313571364RKHKRKRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.107460.0embryo| endosperm| meristem| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC149475.2_FG005
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC149475.2_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0616000.0BT061600.1 Zea mays full-length cDNA clone ZM_BFb0163K05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658772.10.0uncharacterized protein LOC100381553 isoform X2
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A1D6PJW60.0A0A1D6PJW6_MAIZE; Putative lysine-specific demethylase ELF6
STRINGAC149475.2_FGP0050.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Representative plantOGRP75061114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-149C2H2 family protein