PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC149475.2_FGP005 | ||||||||
Common Name | LOC100381553, ZEAMMB73_575839 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 1522aa MW: 167760 Da PI: 6.3843 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.001 | 1412 | 1437 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C C++ F ++ +L+ H r+ + AC149475.2_FGP005 1412 FQCDidLCDMAFETRAELNAHKRNiC 1437 899999****************9877 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00046 | 1437 | 1459 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+Fs++ +LkrH+ +H AC149475.2_FGP005 1437 CTdeSCGKRFSSHKYLKRHQCVH 1459 77778***************998 PP | |||||||
3 | zf-C2H2 | 13.2 | 0.00027 | 1495 | 1521 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ dCg++F+ s++ rH ++ H AC149475.2_FGP005 1495 YKCSapDCGQTFRYVSDYSRHRKKfnH 1521 99********************98666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00545 | 4.5E-12 | 26 | 67 | IPR003349 | JmjN domain |
PROSITE profile | PS51183 | 13.481 | 27 | 68 | IPR003349 | JmjN domain |
Pfam | PF02375 | 4.4E-13 | 28 | 61 | IPR003349 | JmjN domain |
SMART | SM00558 | 8.8E-18 | 221 | 418 | IPR003347 | JmjC domain |
PROSITE profile | PS51184 | 23.294 | 221 | 418 | IPR003347 | JmjC domain |
SuperFamily | SSF51197 | 5.22E-12 | 225 | 301 | No hit | No description |
Pfam | PF02373 | 5.3E-16 | 254 | 324 | IPR003347 | JmjC domain |
SuperFamily | SSF51197 | 5.22E-12 | 356 | 414 | No hit | No description |
SMART | SM00355 | 48 | 1412 | 1434 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 2.3 | 1435 | 1459 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.383 | 1435 | 1464 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1437 | 1459 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.4E-6 | 1437 | 1472 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.2E-6 | 1441 | 1465 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.6E-10 | 1463 | 1517 | No hit | No description |
PROSITE profile | PS50157 | 11.988 | 1465 | 1494 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 9.7E-4 | 1465 | 1489 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.8E-10 | 1466 | 1489 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 1467 | 1489 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.7E-10 | 1490 | 1517 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.281 | 1495 | 1522 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 1495 | 1521 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1497 | 1521 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0033169 | Biological Process | histone H3-K9 demethylation | ||||
GO:0045814 | Biological Process | negative regulation of gene expression, epigenetic | ||||
GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0032452 | Molecular Function | histone demethylase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 1522 aa Download sequence Send to blast |
MSPPPAVATG GSGEPTVPAW LRGLPRAPEY RPTESEFADP IAFLSRVERE AAAYGICKVI 60 PPYPRPSRRF VFAHLNRSLV SSSEAANPTT ASGSSATAPS LPESAAVFTT RHQELGTPRR 120 GRPPPQVLKQ VWQSGERYTL DQFEAKSRAF SKIHLAGLRE PTPLEVESLF WKASADRPIY 180 IEYANDVPGS GFAAPKQSQR HKKRRRESDQ VEEGEKGSGW RLSGSPWNLQ AIARAPGSLT 240 RFMPDDVPGV TSPMVYIGML FSWFAWHVED HELHSLNFLH TGAPKTWYAV PGDRASELEE 300 VIRVHGYGGN PDRLGICPFS CSPSECFGCG LAGTSSEMAS VSIGSNVHDI IQTSDSYEFF 360 ADMYCFSFIE LIVMCYLLTM FIPALLDFHL HGFNCGEAAN FATPQWLKFA KEAAVRRAVM 420 NYLPMLSHQQ LLYLLAVSFI TRTPNVLSGI RSRLRDRKKE ERELLVKQEF LQDMISENKL 480 LCSFLEKKSI RHVVLWEPDL LPSSTALHSC SSGSKAPEKK SEDGCRIESS ERGTKDNSSD 540 GSAHMIGAQT KFMSGNSKSS GTASASMDEV NADTDDEDDL PFDLSIDSGS LTCVACGILG 600 YPFMAILQPS REVLEGISLA HTSRYKMSSE KDNCSNTIPC CPTDRCSFVP SRPSWPAEQQ 660 CLATPLGQAN ISHQNVNSHK DVCLRENEPN GPVPQCNNIS HSCRSENTLH SCSDRGKSEN 720 KISEDSLGPE VGEQTGKYVI NAQAAESSDG TINWNTYCTF ARPRIFCLQH ALEIEKLLEG 780 KGGVHGLIIC HSDFVKLKAL AISVAEEIEF QFDCTDISLA KASKSDLHLI NISIDDEGHE 840 EDGRDWTSQM GLNLKYSAKL RKEKSENQEQ SPLPFGGLLS CPSPVSVVPN LKWLCKRART 900 PYTVIGTMRG SSATATAAEL KPGVKTEIFT NGNVCEDDNR HHSFRQTGLE QPGGLQDCDK 960 PSCSEENGHG RHCLVNIPIA VAEYPMMHQV REGPVSVSTC NDSICLSGSL DLPPHASPVE 1020 VTRYLGCIQS TELSSLPAFS VQHFFNDEST SVEGSIDCVS NGCLESQDDI LGSRDERLQV 1080 QQYQEKMGLR NNPNMKSVDS HLIEGLAVSE GKHGETVAAF LENKERCAKT SYCSNTETKT 1140 TKSAIDNRLE THHLGTGPVK LNSSFNEMHS ADRQCSLVFG CLDSADVPAS TQALSVSPVL 1200 MSDEQQVDDA HSAVKAIEHL GNNLANIKHK SLHMDVLMLE DAQVASMAAV PGHEGESVEA 1260 GSNSFDILLG ALAEESKAAD APGKDEVGKA SLTLITLASN EPSVTEGRVV DVVETDTILG 1320 AGKDDKQLDQ PHGFHLSDLV SRCIGSSNRS DIICYVRRKH KRKRDYSCFV RSPCESLRPR 1380 SKPAVVEESE WSRTAEASFA KRGKRTQAVG SFQCDIDLCD MAFETRAELN AHKRNICTDE 1440 SCGKRFSSHK YLKRHQCVHS EMRPFKCPWE GCKMTFKWLW AQTEHVRVHT GERPYKCSAP 1500 DCGQTFRYVS DYSRHRKKFN HY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ip0_A | 2e-49 | 20 | 452 | 8 | 374 | Transcription factor jumonji (Jmj) family protein |
6ip4_A | 2e-49 | 20 | 452 | 8 | 374 | Arabidopsis JMJ13 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 198 | 204 | QRHKKRR |
2 | 1356 | 1362 | RRKHKRK |
3 | 1357 | 1364 | RKHKRKRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.10746 | 0.0 | embryo| endosperm| meristem| pollen| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC149475.2_FG005 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC149475.2_FGP005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061600 | 0.0 | BT061600.1 Zea mays full-length cDNA clone ZM_BFb0163K05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008658772.1 | 0.0 | uncharacterized protein LOC100381553 isoform X2 | ||||
Swissprot | Q10RP4 | 0.0 | SE14_ORYSJ; Lysine-specific demethylase SE14 | ||||
TrEMBL | A0A1D6PJW6 | 0.0 | A0A1D6PJW6_MAIZE; Putative lysine-specific demethylase ELF6 | ||||
STRING | AC149475.2_FGP005 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9939 | 34 | 37 | Representative plant | OGRP7506 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 1e-149 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | AC149475.2_FGP005 |