PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015903047.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | B3 | ||||||||
Protein Properties | Length: 251aa MW: 28913 Da PI: 8.3549 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.2 | 5.1e-12 | 13 | 71 | 37 | 99 |
EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 t++ ++gr W++ + +k +gr+v+ +GW+eFv+ + +++g f+vF++dg s+f +v ++++ XP_015903047.1 13 TITVPNGRIWKLDF--QKLGGRIVFVDGWQEFVEYHSIDSGYFLVFRYDGFSKF--HVCILDE 71 566799********..********************************988888..9999876 PP | |||||||
2 | B3 | 50.5 | 3.6e-16 | 157 | 240 | 12 | 96 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++ l +p f+ ++++ +s+ +t + +g++W+v+++ ++ +r+ ++kGW++Fv++n+L +gD++vF+l+ ++ + l+v++ XP_015903047.1 157 HNKYLHVPMGFVMTYMQG--CSQVIT-LTCNGKKWQVTFSLkeHRTVNRIRISKGWRGFVRDNNLGAGDVCVFELIMKKATLLKVSI 240 5667999*****999744..775555.667*********995556666699***********************9976666566665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.407 | 1 | 72 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.19 | 5 | 72 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.17E-11 | 10 | 70 | No hit | No description |
SuperFamily | SSF101936 | 1.04E-14 | 12 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-14 | 13 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.4E-9 | 13 | 70 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.281 | 146 | 244 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-19 | 146 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.33E-18 | 147 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.52E-17 | 148 | 241 | No hit | No description |
SMART | SM01019 | 5.5E-11 | 149 | 244 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-14 | 156 | 240 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MNINFVGGIV FATITVPNGR IWKLDFQKLG GRIVFVDGWQ EFVEYHSIDS GYFLVFRYDG 60 FSKFHVCILD ESGTEIYYPW NAARSDVEPH SDKESSEDHD QDNEDDDDDD VEIIDNKMFA 120 SRRLSRRQMS MKNKRAIRAA TSCKYAHPSF IVLLSGHNKY LHVPMGFVMT YMQGCSQVIT 180 LTCNGKKWQV TFSLKEHRTV NRIRISKGWR GFVRDNNLGA GDVCVFELIM KKATLLKVSI 240 YYADQAKKCS K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 6e-15 | 117 | 245 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 6e-15 | 117 | 245 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015903047.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015903047.1 | 0.0 | B3 domain-containing transcription factor VRN1-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-16 | B3 family protein |