PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015903046.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRAS
Protein Properties Length: 555aa    MW: 61385.6 Da    PI: 6.4115
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015903046.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS254.44.2e-781685472374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ++lL  cA+a+++g+ +++q+l+  l+elas++gd+++Rlaa+ ++AL ++l++ s s+++++    + ++ +     ++l  f+evsP++ f +
  XP_015903046.1 168 EQLLNPCATAITAGNPNRVQHLIYVLHELASSTGDANHRLAAHGLRALTHHLSSsSASSCSASEGYVSFTSAEPRFFQKSLLKFYEVSPWFAFPN 262
                     689***************************************************44555555555566665555555555555************ PP

            GRAS  96 ltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg........skeeleetgerLakfAeelgvpfe 177
                      +aN+ Il+ +++e    + +Hi+D ++s+G+QWp+Ll+aL+ R+ ++pp +RiT+++   ++              ++  rL  fA++++++++
  XP_015903046.1 263 NIANSSILQILSEEsdqkRNLHILDVGVSHGVQWPTLLEALTRRAgGPPPLVRITVISGTVNDqktetpfsIGPPGDNLSPRLLGFAKSMNINLQ 357
                     *********999888777889************************55666*******987777555555555556688999************** PP

            GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..ns.esFlerflealeyysalfd 269
                     +n l  ++l++l+ + ++ +p+E+l+V+ +++lh+l    +s+++er+e+Lk+++++ Pk v+++e++a++  ns ++F+++f++ ++y ++++d
  XP_015903046.1 358 INRLDNQSLQELNSQVINSSPDETLIVCAQFRLHHLN---HSSPDERTEFLKALRNMGPKGVILSENNAECscNScGDFATGFSRRVDYLWKFLD 449
                     ***9999*****************************8...67777788******************997664354259***************** PP

            GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                     s+++ +    + r + Er+l++ e+ ++++++ +     +e +ekW er++ aGF    l+e+a +  ++llrk++ ++++r+ee++g + l Wk
  XP_015903046.1 450 STSSAF----KGRESDERRLMEGEAAKALTNRCE----MNEVKEKWCERMRGAGFVGEILGEDAIDGGRALLRKYDnNWEMRMEEKDGYVGLWWK 536
                     **6664....555555566666667777766555....59999*********************************9999*************** PP

            GRAS 364 drpLvsvSaWr 374
                     ++p+ ++S W+
  XP_015903046.1 537 GQPVSFCSLWK 547
                     **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.564141526IPR005202Transcription factor GRAS
PfamPF035141.5E-75168547IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MTIEEPEPNS ASDHILDWLE DSVSFLPFLD DPYNSGEING YHWWDESQDI THDLINARVA  60
SINSPPAIAT DISTAPANPP ISNHVPSPNS SKKRKASDYP IPKTSRNHQN EKKNQGRRIN  120
QAEDGDVVVA VQEVVPPPKK SGGNKKGTGK ATGNNCNNGN VKEGRWAEQL LNPCATAITA  180
GNPNRVQHLI YVLHELASST GDANHRLAAH GLRALTHHLS SSSASSCSAS EGYVSFTSAE  240
PRFFQKSLLK FYEVSPWFAF PNNIANSSIL QILSEESDQK RNLHILDVGV SHGVQWPTLL  300
EALTRRAGGP PPLVRITVIS GTVNDQKTET PFSIGPPGDN LSPRLLGFAK SMNINLQINR  360
LDNQSLQELN SQVINSSPDE TLIVCAQFRL HHLNHSSPDE RTEFLKALRN MGPKGVILSE  420
NNAECSCNSC GDFATGFSRR VDYLWKFLDS TSSAFKGRES DERRLMEGEA AKALTNRCEM  480
NEVKEKWCER MRGAGFVGEI LGEDAIDGGR ALLRKYDNNW EMRMEEKDGY VGLWWKGQPV  540
SFCSLWKLGI KVDDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-4016454784473Protein SHORT-ROOT
5b3h_B1e-4016454730419Protein SHORT-ROOT
5b3h_E1e-4016454730419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015903046.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015903046.10.0nodulation-signaling pathway 1 protein-like
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A2P5ETQ90.0A0A2P5ETQ9_TREOI; GRAS transcription factor
STRINGXP_010086812.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.10.0GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]