PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015902992.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 238aa    MW: 26892.2 Da    PI: 6.5114
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015902992.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.7e-1479131155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++ +hn+ Er RR++iN+ ++ Lr llP  +   + kKls  +++ ++ +YI +Lq
  XP_015902992.1  79 KKLNHNASERDRRKKINHLYSSLRALLPAtD---HTKKLSIPATVSRVLKYIPDLQ 131
                     6789*************************55...7777***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.69478130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1579148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1179131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-1279135No hitNo description
Gene3DG3DSA:4.10.280.107.7E-1379149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1084136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MLALSPPLFP SFGWPLELDP INQDHQINDC FYGDHQCTET TSESFLHFPV PSELPQQLDQ  60
LDRSTPSTTA ISSDLNMVKK LNHNASERDR RKKINHLYSS LRALLPATDH TKKLSIPATV  120
SRVLKYIPDL QQQVEGLVRK KEELLSKMSK QKGNLVHHDD DQENQVKTAA ARSSLSSVSA  180
SQLNDREVAI QISTYKVNNN PISEILNTLE EDGFSMLNAS SFESFEGRVF HSLHLQRN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015902992.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015902992.11e-177transcription factor ORG3 isoform X2
TrEMBLA0A2P5ETM52e-94A0A2P5ETM5_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_004290411.12e-84(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.13e-53bHLH family protein