PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015902632.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GRAS | ||||||||
Protein Properties | Length: 546aa MW: 60787.8 Da PI: 5.6926 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 445.4 | 4e-136 | 178 | 546 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +L +cA+a++++d+ +++l+++l++++s +g+p+qRl ay++e+L arla+s+s++ykal+++e + +e l++++l++ev+P++kf+++ XP_015902632.1 178 GVLCACAKALADNDMVTTEWLITELRQMVSVSGEPLQRLGAYILEGLVARLASSGSSIYKALRCKEPA---GAELLSYMHLLYEVCPYFKFGYMS 269 689****************************************************************9...9*********************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 aN aI eav+ e++vHiiDf+i qG+QW+ L++aLa+Rp+gpp++RiTg+++++s + l +g+rL+++A++++vpfef+ v + ++++ XP_015902632.1 270 ANGAIAEAVKDESMVHIIDFQIAQGTQWIILIHALATRPGGPPRIRITGIDDSTSAyaRGGGLDVVGQRLSSIAKSCKVPFEFHG-VGISGSEVQ 363 ****************************************************998899999************************.68899**** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 le+Lr++pgEalaVn++l+lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n+++F+ r+le+l+yy+a+f+s+++ +pr+++eri+v XP_015902632.1 364 LEDLRIQPGEALAVNFALMLHHMPDESVSSQNHRDRLLRLVKSLSPKVVTLVEQECNTNTAPFFPRVLETLNYYMAVFESIDVAMPRDKRERISV 458 *********************************************************************************************** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 E+++l+reivn++acegaer+erhe l+kWr+r+++aG++p+pls+ +++++k+ll++++++ +++ee++g+l+lgW++++Lv+ +aWr XP_015902632.1 459 EQHCLAREIVNIIACEGAERVERHEPLGKWRSRFMMAGYTPYPLSSIVNATIKALLKNYSEN-FTLEERDGALYLGWMNKALVTSCAWR 546 ************************************************************55.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.103 | 150 | 527 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-133 | 178 | 546 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MHTSKNHRIP NCSHKSFEQS VEEPESYYWP PIQNLEHRTS SDEVSQGIHL SAHAFGQYCT 60 LESSSKTNCN PVHNTSSSVS FSSDGSPESQ QDAQSYPLDK HYYPDNACAS PPSQSCLTDD 120 IDDLRHKIRE LETAMLGTDS EILDTFTVTN EVGSYAQSLQ AESWRQIAEM ITRGDLKGVL 180 CACAKALADN DMVTTEWLIT ELRQMVSVSG EPLQRLGAYI LEGLVARLAS SGSSIYKALR 240 CKEPAGAELL SYMHLLYEVC PYFKFGYMSA NGAIAEAVKD ESMVHIIDFQ IAQGTQWIIL 300 IHALATRPGG PPRIRITGID DSTSAYARGG GLDVVGQRLS SIAKSCKVPF EFHGVGISGS 360 EVQLEDLRIQ PGEALAVNFA LMLHHMPDES VSSQNHRDRL LRLVKSLSPK VVTLVEQECN 420 TNTAPFFPRV LETLNYYMAV FESIDVAMPR DKRERISVEQ HCLAREIVNI IACEGAERVE 480 RHEPLGKWRS RFMMAGYTPY PLSSIVNATI KALLKNYSEN FTLEERDGAL YLGWMNKALV 540 TSCAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-63 | 180 | 546 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015902632.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015902629.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_015902630.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_015902631.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_015902632.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q8H125 | 0.0 | SCL5_ARATH; Scarecrow-like protein 5 | ||||
TrEMBL | A0A2P5F8H6 | 0.0 | A0A2P5F8H6_TREOI; GRAS transcription factor | ||||
STRING | XP_008227106.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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