PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015902565.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 258aa    MW: 28034.9 Da    PI: 6.2358
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015902565.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-193786255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa++kl+g
  XP_015902565.1 37 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHEAAMAYDAAARKLYG 86
                    69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.70E-223696No hitNo description
SMARTSM003801.9E-3637100IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-213794IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-303795IPR001471AP2/ERF domain
PfamPF008474.9E-143786IPR001471AP2/ERF domain
PROSITE profilePS5103222.5633794IPR001471AP2/ERF domain
PRINTSPR003677.9E-103849IPR001471AP2/ERF domain
PRINTSPR003677.9E-106076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MNNGVAERKQ QVKRPAQASS RKGCMRGKGG PENATCTYKG VRQRTWGKWV AEIREPNRGA  60
RLWLGTFDTS HEAAMAYDAA ARKLYGSDAK LNLPELSPTT HQHYHSCSSA GNTTQQNQQL  120
PPRILHQNSS SIINNSTING VLNDVVNTAQ LYDSNSTSST VCSTNENVSQ ANNPAAVADN  180
NNSNNNNVVM KMGANNEGEV DNGLWGSMNA SLPVFDESIW AEAALSIDFP LMEDHGIFAG  240
NFVDGTTGWE ALQTPWCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-183894360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015902565.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015902565.10.0dehydration-responsive element-binding protein 2D-like
TrEMBLA0A2N9IGX52e-83A0A2N9IGX5_FAGSY; Uncharacterized protein
STRINGXP_002510462.14e-81(Ricinus communis)
STRINGXP_010105262.16e-81(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.17e-49ERF family protein