PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015902375.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | HB-other | ||||||||
Protein Properties | Length: 258aa MW: 29784.4 Da PI: 4.6504 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 17.7 | 6.3e-06 | 17 | 73 | 7 | 51 |
--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNr 51 ft +++ e+e+l+++ ++ +++e ++ A++ ++t +qV WFqN+ XP_015902375.1 17 FTLKEIVEMENLYKEvgEQSLDKEFCQDVAMRYsckssragkpSITWEQVHKWFQNK 73 899999********888***************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16719 | 2.8E-40 | 89 | 216 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006306 | Biological Process | DNA methylation | ||||
GO:0006346 | Biological Process | methylation-dependent chromatin silencing | ||||
GO:0031047 | Biological Process | gene silencing by RNA | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEEMSSSSEN WDSLSEFTLK EIVEMENLYK EVGEQSLDKE FCQDVAMRYS CKSSRAGKPS 60 ITWEQVHKWF QNKHEGLQAK SKGPTDISEL AFEAKSLKDN AWYDVASFLS YRVLCSGELE 120 VRVRFSGFGK EEDEWVNVRN AVRERSIPLE PSECHKVNVG DLVLCFQDRE NHAIYCDAHV 180 IEIQRKFHDI GDCRCIFVVR YDEDYTVEKV HLGRICSRPA GCDWSANTNI LAITDANTDT 240 DTQQEMCVDE KLKLSFLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iup_A | 3e-60 | 88 | 219 | 2 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iup_B | 3e-60 | 88 | 219 | 2 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_A | 3e-60 | 88 | 219 | 2 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 3e-60 | 88 | 219 | 2 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 3e-60 | 88 | 219 | 2 | 133 | SHH1 SAWADEE |
4iur_B | 3e-60 | 88 | 219 | 2 | 133 | SHH1 SAWADEE |
4iut_A | 3e-60 | 88 | 219 | 2 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 3e-60 | 88 | 219 | 2 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 3e-60 | 88 | 219 | 2 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 3e-60 | 88 | 219 | 2 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 3e-60 | 88 | 219 | 2 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 3e-60 | 88 | 219 | 2 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in RNA-directed DNA methylation (RdDM). Required for the silencing of some endogenous RdDM targets and accumulation of 24-nt siRNAs, but not for the production of Pol V-dependent transcripts. Functions in transcriptional silencing through both DNA methylation-dependent and -independent pathways. Required for both maintenance and de-novo DNA methylation. Plays a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. {ECO:0000269|PubMed:21811420, ECO:0000269|PubMed:22064704, ECO:0000269|PubMed:23636332, ECO:0000269|PubMed:23637343}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015902375.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015902375.1 | 0.0 | protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X3 | ||||
Swissprot | Q9XI47 | 5e-87 | SHH1_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 1 | ||||
TrEMBL | A0A2P5AJF4 | 1e-103 | A0A2P5AJF4_PARAD; SAWADEE domain containing protein | ||||
STRING | XP_008228433.1 | 4e-97 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.3 | 2e-49 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Publications ? help Back to Top | |||
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