PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015902374.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | HB-other | ||||||||
Protein Properties | Length: 286aa MW: 32581.4 Da PI: 4.5074 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 20.8 | 6.5e-07 | 17 | 71 | 7 | 51 |
--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC........TS-HHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFek..nrypsaeereeLAkkl........gLterqVkvWFqNr 51 ft +++ e+e+l+++ ++ +++e ++ A+++ ++t +qV WFqN+ XP_015902374.1 17 FTLKEIVEMENLYKEvgEQSLDKEFCQDVAMSCkssragkpSITWEQVHKWFQNK 71 89999*********888*************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 2.2E-4 | 17 | 71 | IPR001356 | Homeobox domain |
Pfam | PF16719 | 3.6E-40 | 117 | 244 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006306 | Biological Process | DNA methylation | ||||
GO:0006346 | Biological Process | methylation-dependent chromatin silencing | ||||
GO:0031047 | Biological Process | gene silencing by RNA | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MEEMSSSSEN WDSLSEFTLK EIVEMENLYK EVGEQSLDKE FCQDVAMSCK SSRAGKPSIT 60 WEQVHKWFQN KHEGLQAKST SPPAAFKLSV DLSGFSVLEE PESSQKPEGK GPTDISELAF 120 EAKSLKDNAW YDVASFLSYR VLCSGELEVR VRFSGFGKEE DEWVNVRNAV RERSIPLEPS 180 ECHKVNVGDL VLCFQDRENH AIYCDAHVIE IQRKFHDIGD CRCIFVVRYD EDYTVEKVHL 240 GRICSRPAGC DWSANTNILA ITDANTDTDT QQEMCVDEKL KLSFLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iup_A | 6e-60 | 116 | 247 | 2 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iup_B | 6e-60 | 116 | 247 | 2 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_A | 6e-60 | 116 | 247 | 2 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 6e-60 | 116 | 247 | 2 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 6e-60 | 116 | 247 | 2 | 133 | SHH1 SAWADEE |
4iur_B | 6e-60 | 116 | 247 | 2 | 133 | SHH1 SAWADEE |
4iut_A | 6e-60 | 116 | 247 | 2 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 6e-60 | 116 | 247 | 2 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 6e-60 | 116 | 247 | 2 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 6e-60 | 116 | 247 | 2 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 6e-60 | 116 | 247 | 2 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 6e-60 | 116 | 247 | 2 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in RNA-directed DNA methylation (RdDM). Required for the silencing of some endogenous RdDM targets and accumulation of 24-nt siRNAs, but not for the production of Pol V-dependent transcripts. Functions in transcriptional silencing through both DNA methylation-dependent and -independent pathways. Required for both maintenance and de-novo DNA methylation. Plays a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. {ECO:0000269|PubMed:21811420, ECO:0000269|PubMed:22064704, ECO:0000269|PubMed:23636332, ECO:0000269|PubMed:23637343}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015902374.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015902374.1 | 0.0 | protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X2 | ||||
Swissprot | Q9XI47 | 7e-90 | SHH1_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 1 | ||||
TrEMBL | A0A2P5AJF4 | 1e-114 | A0A2P5AJF4_PARAD; SAWADEE domain containing protein | ||||
STRING | XP_010062522.1 | 1e-109 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 2e-54 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Publications ? help Back to Top | |||
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