PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015902366.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ERF | ||||||||
Protein Properties | Length: 384aa MW: 42849.1 Da PI: 4.6776 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 114 | 163 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g XP_015902366.1 114 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 163 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-32 | 114 | 173 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.16E-33 | 114 | 172 | No hit | No description |
PROSITE profile | PS51032 | 24.092 | 114 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-22 | 114 | 173 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.1E-37 | 114 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 115 | 126 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.7E-12 | 115 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 137 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MCGGAIISDF ISGPRSQRLT SDYLWRDLNK PRCGKRFSKP LRSEVIDVNE DFEADFQNFK 60 DDSDVEEDDD VIDVKPFTFS AARSPTLSRG STNVKSVEFS GQAEKSAKRK RKNQYRGIRQ 120 RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA ARAYDAEARR IRGKKAKVNF PDETPRASPK 180 HSVKANPQKS MSNACSNSVQ SSLNQNFSFV NNQDQDYYNT MGFLEEKPPT NQYASVNSIP 240 PNGNIGVASN TAPAYFSSDQ GSNSFEYSDF GWGEQSKTPE ISSVLSATLE SDESLFLEDA 300 NPKKKLKSDS ENAMPTEENN ANTLSEELSA FESQMKFLQM PYLEGSNWDA SMDAFLNGDA 360 TQDGGNPVDL WSFDDFPSMV GAVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-21 | 114 | 171 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 7e-21 | 113 | 173 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 301 | 307 | PKKKLKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015902366.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF191419 | 3e-93 | KF191419.1 Frangula alnus subsp. alnus clone Contig33922 polymorphic genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015902357.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like | ||||
Refseq | XP_015902366.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like | ||||
Swissprot | Q9SSA8 | 3e-86 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A2S1M4Z2 | 0.0 | A0A2S1M4Z2_MORAL; Ethylene response factor | ||||
STRING | XP_010089706.1 | 0.0 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 6e-86 | related to AP2 12 |