PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015902347.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 465aa    MW: 52031 Da    PI: 6.7949
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015902347.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.32.1e-55181521129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdee++++yL++kv + ++++ ++i e+d++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ 
  XP_015902347.1  18 LPPGFRFHPTDEEIISYYLTEKVLNCNFSA-SAIGEADLNKSEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIYKG 111
                     79**************************99.88***************99999****************************************98 PP

             NAM  96 .......kgelvglkktLvfykgrapkgektdWvmheyrle 129
                            ++ lvg+kktLvfykgrapkgekt+Wvmheyrle
  XP_015902347.1 112 kgggggsGSCLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 152
                     66655444445****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-6315177IPR003441NAC domain
PROSITE profilePS5100559.63918176IPR003441NAC domain
PfamPF023659.5E-3019151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MEDQAIVVNK PEEELIDLPP GFRFHPTDEE IISYYLTEKV LNCNFSASAI GEADLNKSEP  60
WDLPKKAKMG EKEWYFFCQR DRKYPTGMRT NRATESGYWK ATGKDKEIYK GKGGGGGSGS  120
CLVGMKKTLV FYKGRAPKGE KTNWVMHEYR LEGKFSYYNL PKSAKDEWVV CRVFHKNMGI  180
KKSIPNMNPI QGGLLMRMSS VDNDSDHLLI DSCSLPPLMD INPYDGRHDH HHQQQQELIK  240
GTTTVPSPTT RTSQSQGAYF NYLSNIGSNN DNHQQQQTKQ HNQSPNPNQM MMLKSLQQLP  300
TSTSTSYQAP SLLMTNHHPI LYSQLLPNIP PSPPPPHYSN LIHPNLSSTL INNLGGYFEP  360
PAGGNNTSDY GHHHHHPHQQ ASGGNYNNNN NDGLILEMRQ CKVEQLSSNN QSMVSLSQDT  420
GLSTDVNTTA EISSSVHVSK PDDGQAAAPS IPPISDIEAF NWDDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-501618215171NO APICAL MERISTEM PROTEIN
1ut4_B2e-501618215171NO APICAL MERISTEM PROTEIN
1ut7_A2e-501618215171NO APICAL MERISTEM PROTEIN
1ut7_B2e-501618215171NO APICAL MERISTEM PROTEIN
3swm_A2e-501618218174NAC domain-containing protein 19
3swm_B2e-501618218174NAC domain-containing protein 19
3swm_C2e-501618218174NAC domain-containing protein 19
3swm_D2e-501618218174NAC domain-containing protein 19
3swp_A2e-501618218174NAC domain-containing protein 19
3swp_B2e-501618218174NAC domain-containing protein 19
3swp_C2e-501618218174NAC domain-containing protein 19
3swp_D2e-501618218174NAC domain-containing protein 19
4dul_A2e-501618215171NAC domain-containing protein 19
4dul_B2e-501618215171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015902347.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6052162e-45KR605216.1 Manihot esculenta NAC transcription factors 78 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866460.10.0NAC domain-containing protein 46-like
RefseqXP_015902347.10.0NAC domain-containing protein 46-like
TrEMBLW9QN111e-137W9QN11_9ROSA; NAC domain-containing protein 100
STRINGXP_010088484.11e-137(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-108Arabidopsis NAC domain containing protein 87