PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015902288.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family CO-like
Protein Properties Length: 512aa    MW: 55877.6 Da    PI: 6.4985
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015902288.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.35.7e-071251437
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                      C+ ++++ ++l+C+ ++  lC  C ++ H+       H
  XP_015902288.1 12 VPCDFCSDQVAILYCRADSAKLCLFCDQQVHSAnllsrkH 51
                    67***************************9*545555555 PP
2zf-B_box223.3e-075498341
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                     ++C+++ +++++  C +++  lC++C    H g       H++ p
  XP_015902288.1 54 SQICDNCASEPVSVRCATDNLVLCQECDWDAH-GtcslsasHDRNP 98
                    579************************99999.5477777777665 PP
3CCT644.4e-22464507144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++
  XP_015902288.1 464 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAT 507
                     7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.1E-12956IPR000315B-box-type zinc finger
PROSITE profilePS501199.641956IPR000315B-box-type zinc finger
CDDcd000213.26E-61244No hitNo description
PfamPF006432.0E-51251IPR000315B-box-type zinc finger
PROSITE profilePS501199.7415299IPR000315B-box-type zinc finger
CDDcd000212.61E-65685No hitNo description
SMARTSM003361.55799IPR000315B-box-type zinc finger
PROSITE profilePS5101714.912464506IPR010402CCT domain
PfamPF062032.0E-16464506IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MVNPKSRSAE SVPCDFCSDQ VAILYCRADS AKLCLFCDQQ VHSANLLSRK HLRSQICDNC  60
ASEPVSVRCA TDNLVLCQEC DWDAHGTCSL SASHDRNPVD GFSGCPSALE LASIWGFDIE  120
DKKPARPDPP FPNWASPHDM LMPVDSSSWT YYKYKPDGVS LQVQDLIVPN ENGFVFPNMG  180
CGEVVMKKQS CTARCGKQKQ VMYKQLVELL RRDLMANAAG GGDGGGGGEG NYQPGTPNRS  240
GGCWQGNVEA IGLRNESNGD DGVNGLLTGS SGGAGVQQHL QQQTTPFTSL LMMPMPPHEL  300
KDGDGIVDGD MLWDTNPNGQ STQIWDFNLG RLREHEESGP MEVAYCSNDA GFMIKNFGEL  360
MKETSLTSSK ILGDIYQINC PMGQDDMTFN NNGNNPTASQ GPATSESNNL PIGRPSSGSG  420
LVKEKGCSAS KDVHFTEQSF LVRSDSLRTA AATKANVEVL AQNRGNAMQR YKEKKKTRRY  480
DKHIRYESRK ARADTRKRVK GRFVKATEAP DG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015902288.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015902288.10.0zinc finger protein CONSTANS-LIKE 15
TrEMBLA0A2P5F2210.0A0A2P5F221_TREOI; Zinc finger-domain containing protein
STRINGEMJ235360.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.11e-110B-box type zinc finger protein with CCT domain