PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015901956.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GRF | ||||||||
Protein Properties | Length: 411aa MW: 45121.2 Da PI: 9.3435 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81.8 | 5.9e-26 | 146 | 189 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e XP_015901956.1 146 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKHVE 189 79****************************************97 PP | |||||||
2 | QLQ | 52.3 | 1.7e-18 | 75 | 111 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ aQ+q+L+ Q+l+++y++a++ vPpeLlq+i+k XP_015901956.1 75 SYFSLAQWQELELQALIFRYMLAGAAVPPELLQPIKK 111 79*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.7E-11 | 75 | 111 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.5E-13 | 76 | 109 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.689 | 76 | 111 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.479 | 146 | 190 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.5E-22 | 147 | 189 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MDFHLKQWRN QHESEQQHSA KIPKLLLETH QPHQQPEPSG PALPLFVPEP NSKISNLSAF 60 PGATSAPTRF TRMGSYFSLA QWQELELQAL IFRYMLAGAA VPPELLQPIK KSLLHTPYFL 120 HHPLQHYPHY QPPLFQSGYW GRAAMDPEPG RCRRTDGKKW RCSRDVVAGQ KYCERHMHRG 180 RNRSRKHVEI PTPTPIPPTT AVAGNGGGGT QLTSTHHQPI AVPTLSTVSG GGGGTHFSIS 240 GPSSSVDLLH LNQSSSESRT ENKDLFQPHN HQELVSKDGK SDGHILRHFF DDWPRSIQEP 300 DNGGNNSKAI ASPMNSATSL SISIPGNSSS DVSLKLSTGN NGDEAGRHQE AVREQHRQLN 360 WASGWAANHM ASMGGPLAEA LRSSSNSHSS PTSVLHQLPR GSVSETSFVS T |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015901956.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF266428 | 2e-44 | KF266428.1 Ziziphus jujuba microsatellite SSR928 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015901955.1 | 0.0 | growth-regulating factor 3 isoform X1 | ||||
Refseq | XP_015901956.1 | 0.0 | growth-regulating factor 3 isoform X1 | ||||
Swissprot | Q8L8A7 | 2e-98 | GRF4_ARATH; Growth-regulating factor 4 | ||||
TrEMBL | A0A2I4DTW3 | 0.0 | A0A2I4DTW3_JUGRE; growth-regulating factor 3-like isoform X1 | ||||
STRING | VIT_08s0007g03760.t01 | 1e-179 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 1e-66 | growth-regulating factor 4 |
Publications ? help Back to Top | |||
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