PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015901955.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRF
Protein Properties Length: 411aa    MW: 45121.2 Da    PI: 9.3435
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015901955.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC81.85.9e-26146189144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
  XP_015901955.1 146 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKHVE 189
                     79****************************************97 PP
2QLQ52.31.7e-1875111137
             QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     s+F+ aQ+q+L+ Q+l+++y++a++ vPpeLlq+i+k
  XP_015901955.1  75 SYFSLAQWQELELQALIFRYMLAGAAVPPELLQPIKK 111
                     79*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.7E-1175111IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.5E-1376109IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.68976111IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.479146190IPR014977WRC domain
PfamPF088797.5E-22147189IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDFHLKQWRN QHESEQQHSA KIPKLLLETH QPHQQPEPSG PALPLFVPEP NSKISNLSAF  60
PGATSAPTRF TRMGSYFSLA QWQELELQAL IFRYMLAGAA VPPELLQPIK KSLLHTPYFL  120
HHPLQHYPHY QPPLFQSGYW GRAAMDPEPG RCRRTDGKKW RCSRDVVAGQ KYCERHMHRG  180
RNRSRKHVEI PTPTPIPPTT AVAGNGGGGT QLTSTHHQPI AVPTLSTVSG GGGGTHFSIS  240
GPSSSVDLLH LNQSSSESRT ENKDLFQPHN HQELVSKDGK SDGHILRHFF DDWPRSIQEP  300
DNGGNNSKAI ASPMNSATSL SISIPGNSSS DVSLKLSTGN NGDEAGRHQE AVREQHRQLN  360
WASGWAANHM ASMGGPLAEA LRSSSNSHSS PTSVLHQLPR GSVSETSFVS T
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015901955.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2664282e-44KF266428.1 Ziziphus jujuba microsatellite SSR928 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015901955.10.0growth-regulating factor 3 isoform X1
RefseqXP_015901956.10.0growth-regulating factor 3 isoform X1
SwissprotQ8L8A72e-98GRF4_ARATH; Growth-regulating factor 4
TrEMBLA0A2I4DTW30.0A0A2I4DTW3_JUGRE; growth-regulating factor 3-like isoform X1
STRINGVIT_08s0007g03760.t011e-179(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78953242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.11e-66growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]